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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa2085 and SMa2087 are separated by 296 nucleotides
SMa2087 and SMa2089 are separated by 13 nucleotides
SMa2089 and SMa2091 overlap by 10 nucleotides
SMa2091 and SMa2093 are separated by 9 nucleotides
SMa2085: SMa2085 - ABC transporter permease, at 1,177,079 to 1,178,065
SMa2085
SMa2087: SMa2087 - desulfurization enzyme, at 1,178,362 to 1,179,402
SMa2087
SMa2089: SMa2089 - hypothetical protein, at 1,179,416 to 1,179,769
SMa2089
SMa2091: SMa2091 - hypothetical protein, at 1,179,760 to 1,180,647
SMa2091
SMa2093: SMa2093 - desulfurization enzyme, at 1,180,657 to 1,181,691
SMa2093
Group
Condition
SMa2085
SMa2087
SMa2089
SMa2091
SMa2093
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.2
+0.2
-1.0
-0.9
-0.6
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-0.1
-0.6
+0.1
-1.0
-0.4
stress
Cisplatin 0.001 mg/ml
+0.2
+0.0
-1.0
-0.5
-0.2
carbon source
methyl 3-keto-a-D-glucopyranoside (C)
-0.0
-0.0
-0.5
-0.9
+0.2
stress
nitrate 40 mM
-0.2
+0.3
-1.4
-0.3
+0.3
nitrogen source
Uridine (N)
-0.3
+0.2
-0.8
-0.1
-0.0
nitrogen source
L-Arginine (N)
-0.7
-0.2
+0.5
-0.6
+0.0
tsb
Day4 TSB
-0.4
-0.1
+0.5
-0.5
-0.0
nitrogen source
L-Leucine (N)
-0.9
-0.3
-0.5
+0.8
+0.4
stress
6-Pentyl-2H-pyran-2-one 0.4177863333 mM
-0.3
-0.1
+0.5
-0.4
-0.2
carbon source
L-Proline (C)
+0.3
-0.1
+0.2
-0.6
-0.2
stress
Chloride 200 mM
-0.2
-0.1
+0.3
-0.6
+0.2
nitrogen source
L-Serine (N)
+0.1
+0.4
-0.4
-0.3
-0.1
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.4
-0.3
-0.3
+0.1
-0.3
nitrogen source
L-Glutamine (N)
-0.3
-0.5
+0.0
+0.2
+0.3
r2a control
R2A control for volatile experiments
-0.2
+0.0
+0.5
-0.7
+0.0
nutrient
L-Histidine
-0.2
-0.5
-0.1
+0.5
+0.0
carbon source
Lactulose (C)
-0.4
-0.2
+0.5
+0.1
-0.2
stress
Nickel (II) chloride 1 mM
+0.3
+0.5
-0.3
-0.7
+0.1
stress
Thallium(I) acetate 0.0025 mg/ml
+0.0
+0.2
-0.5
-0.4
+0.5
nutrient
L-Histidine
-0.4
-0.4
+0.6
+0.1
-0.0
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.5
+0.2
+0.1
+0.4
-0.3
carbon source
Mannobiose (C)
+0.2
+0.1
+0.4
-0.6
-0.1
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.5
-0.0
+0.3
-0.1
+0.5
nitrogen source
D-Glucosamine Hydrochloride (N)
-0.1
+0.5
-0.2
-0.3
+0.4
r2a control
R2A control for volatile experiments
-0.4
+0.5
+0.4
-0.1
+0.0
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.1
+0.3
+0.7
-0.4
+0.0
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.5
+0.3
+0.4
-0.2
-0.3
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-0.3
+0.2
+0.4
+0.2
+0.2
stress
Paraquat dichloride 0.2 mg/ml
+0.1
+0.0
+0.3
+0.5
+0.4
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