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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa2083 and SMa2085 overlap by 1 nucleotides
SMa2085 and SMa2087 are separated by 296 nucleotides
SMa2087 and SMa2089 are separated by 13 nucleotides
SMa2089 and SMa2091 overlap by 10 nucleotides
SMa2083: SMa2083 - ABC transporter permease, at 1,176,081 to 1,177,079
SMa2083
SMa2085: SMa2085 - ABC transporter permease, at 1,177,079 to 1,178,065
SMa2085
SMa2087: SMa2087 - desulfurization enzyme, at 1,178,362 to 1,179,402
SMa2087
SMa2089: SMa2089 - hypothetical protein, at 1,179,416 to 1,179,769
SMa2089
SMa2091: SMa2091 - hypothetical protein, at 1,179,760 to 1,180,647
SMa2091
Group
Condition
SMa2083
SMa2085
SMa2087
SMa2089
SMa2091
stress
nitrate 40 mM
-0.6
-0.2
+0.3
-1.4
-0.3
stress
Cisplatin 0.001 mg/ml
-0.7
+0.2
+0.0
-1.0
-0.5
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.4
+0.2
+0.2
-1.0
-0.9
carbon source
methyl 3-keto-a-D-glucopyranoside (C)
-0.1
-0.0
-0.0
-0.5
-0.9
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
+0.3
-0.1
-0.6
+0.1
-1.0
nitrogen source
L-Leucine (N)
-0.3
-0.9
-0.3
-0.5
+0.8
stress
Thallium(I) acetate 0.0025 mg/ml
-0.5
+0.0
+0.2
-0.5
-0.4
stress
Sisomicin 0.004 mg/ml
-0.7
+0.1
-0.3
-0.4
+0.1
nitrogen source
Uridine (N)
-0.1
-0.3
+0.2
-0.8
-0.1
nitrogen source
L-Glutamine (N)
-0.3
-0.3
-0.5
+0.0
+0.2
nitrogen source
L-Arginine (N)
+0.2
-0.7
-0.2
+0.5
-0.6
pH
LB, pH8
-0.3
+0.1
+0.2
+0.1
-0.8
stress
Polymyxin B sulfate 0.00005 mg/ml
-0.6
+0.4
-0.3
-0.3
+0.1
stress
Nickel (II) chloride 1 mM
-0.4
+0.3
+0.5
-0.3
-0.7
nutrient
L-Histidine
-0.3
-0.2
-0.5
-0.1
+0.5
tsb
Day4 TSB
-0.0
-0.4
-0.1
+0.5
-0.5
stress
6-Pentyl-2H-pyran-2-one 0.4177863333 mM
-0.2
-0.3
-0.1
+0.5
-0.4
nutrient
L-Histidine
-0.1
-0.4
-0.4
+0.6
+0.1
carbon source
L-Arabinose (C)
+0.5
-0.1
-0.1
-0.6
+0.2
carbon source
acetate (C)
+0.5
-0.1
-0.2
+0.2
-0.5
r2a control
R2A control for volatile experiments
+0.2
-0.2
+0.0
+0.5
-0.7
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.4
-0.5
+0.2
+0.1
+0.4
carbon source
L-Proline (C)
+0.2
+0.3
-0.1
+0.2
-0.6
nitrogen source
D-Glucosamine Hydrochloride (N)
+0.2
-0.1
+0.5
-0.2
-0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.5
+0.2
-0.1
+0.3
+0.2
carbon source
Mannobiose (C)
+0.2
+0.2
+0.1
+0.4
-0.6
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.0
-0.1
+0.3
+0.7
-0.4
r2a control
R2A control for volatile experiments
+0.2
-0.4
+0.5
+0.4
-0.1
stress
perchlorate 10 mM
+0.4
-0.1
-0.1
+0.2
+0.6
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.0
+0.5
+0.3
+0.4
-0.2
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