Fitness for 5 genes in Sinorhizobium meliloti 1021

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500 ntSMa2019 and SMa2020 are separated by 14 nucleotidesSMa2020 and SMa2023 are separated by 144 nucleotidesSMa2023 and SMa2025 are separated by 187 nucleotidesSMa2025 and SMa2027 are separated by 324 nucleotides SMa2019: SMa2019 - oxidoreductase, at 1,143,193 to 1,143,603 SMa2019 SMa2020: SMa2020 - Transcriptional regulator, at 1,143,618 to 1,144,085 SMa2020 SMa2023: SMa2023 - hypothetical protein, at 1,144,230 to 1,145,021 SMa2023 SMa2025: SMa2025 - oxidoreductase, at 1,145,209 to 1,146,840 SMa2025 SMa2027: SMa2027 - LysR family transcriptional regulator, at 1,147,165 to 1,148,058 SMa2027
Group Condition SMa2019 SMa2020 SMa2023 SMa2025 SMa2027
carbon source methyl 3-keto-a-D-glucopyranoside (C) N.D. -2.3 -0.5 +0.1 -0.0
carbon source L-Histidine (C) N.D. -2.4 -0.2 -0.0 +0.0
carbon source pipercolic (C) N.D. -2.2 -0.4 +0.1 -0.0
carbon source methyl 3-keto-a-D-glucopyranoside (C) N.D. -2.2 -0.1 -0.2 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -1.2 -0.7 -0.1 -0.3
carbon source L-Lysine (C) N.D. -2.1 -0.3 +0.2 +0.1
carbon source L-Lysine (C) N.D. -2.0 -0.1 +0.1 -0.1
carbon source L-Proline (C) N.D. -2.1 -0.1 -0.0 +0.2
carbon source D-Arabinose (C) N.D. -2.3 +0.1 +0.1 -0.0
carbon source pipercolic (C) N.D. -2.1 +0.1 +0.1 -0.1
carbon source Myristic (C) N.D. -2.3 +0.3 +0.1 +0.0
carbon source L-Glutamine (C) N.D. -1.5 -0.4 +0.1 +0.0
carbon source 5-Aminovaleric (C) N.D. -1.9 +0.2 -0.0 -0.0
carbon source 5-Aminovaleric (C) N.D. -1.6 -0.2 -0.1 +0.2
carbon source Lactitol (C) N.D. -1.2 -0.6 +0.1 +0.1
carbon source methyl-beta-D-xylopyranoside (C) N.D. -1.8 -0.1 +0.2 +0.1
carbon source L-Lysine (C) N.D. -1.8 +0.3 +0.1 -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -1.2 +0.7 -0.1 -0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -1.4 +0.3 +0.2 +0.3
nitrogen source nitrate (N) N.D. -1.4 +0.4 +0.3 +0.2
stress D-Cycloserine 0.05 mg/ml N.D. +2.3 -0.1 +0.2 -0.2
stress Cobalt chloride 0.16 mM N.D. +2.6 -0.1 +0.1 +0.0
stress Paraquat dichloride 0.05 mg/ml N.D. +2.6 +0.3 +0.1 +0.0
stress Paraquat dichloride 0.2 mg/ml N.D. +2.9 +0.3 +0.1 -0.2
pH LB, pH8 N.D. +4.0 -0.4 -0.1 -0.0
pH LB, pH8 N.D. +4.0 -0.1 -0.1 -0.2
stress perchlorate 10 mM N.D. +4.4 -0.3 -0.1 -0.4
lb LB N.D. +3.9 +0.3 +0.3 -0.0
lb LB N.D. +4.0 +0.5 +0.1 +0.1
lb LB N.D. +4.7 +0.3 +0.1 -0.1
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