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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa2014 and SMa2015 overlap by 56 nucleotides
SMa2015 and SMa2019 are separated by 785 nucleotides
SMa2019 and SMa2020 are separated by 14 nucleotides
SMa2020 and SMa2023 are separated by 144 nucleotides
SMa2014: SMa2014 - transcriptional regulator, at 1,141,504 to 1,141,941
SMa2014
SMa2015: SMa2015 - transcriptional regulator, at 1,141,886 to 1,142,407
SMa2015
SMa2019: SMa2019 - oxidoreductase, at 1,143,193 to 1,143,603
SMa2019
SMa2020: SMa2020 - Transcriptional regulator, at 1,143,618 to 1,144,085
SMa2020
SMa2023: SMa2023 - hypothetical protein, at 1,144,230 to 1,145,021
SMa2023
Group
Condition
SMa2014
SMa2015
SMa2019
SMa2020
SMa2023
carbon source
methyl 3-keto-a-D-glucopyranoside (C)
+0.0
-0.3
N.D.
-2.3
-0.5
carbon source
L-Histidine (C)
+0.1
-0.4
N.D.
-2.4
-0.2
carbon source
L-Proline (C)
-0.1
-0.2
N.D.
-2.1
-0.1
carbon source
L-Lysine (C)
-0.0
-0.0
N.D.
-2.1
-0.3
carbon source
pipercolic (C)
+0.3
-0.1
N.D.
-2.2
-0.4
carbon source
L-Lysine (C)
-0.1
-0.1
N.D.
-2.0
-0.1
pH
LB, pH6
-0.7
-0.4
N.D.
-0.3
-0.9
carbon source
L-Glutamine (C)
-0.3
-0.0
N.D.
-1.5
-0.4
carbon source
pipercolic (C)
+0.0
-0.2
N.D.
-2.1
+0.1
carbon source
Myristic (C)
+0.1
-0.2
N.D.
-2.3
+0.3
carbon source
methyl 3-keto-a-D-glucopyranoside (C)
+0.2
-0.0
N.D.
-2.2
-0.1
carbon source
D-Arabinose (C)
+0.3
+0.1
N.D.
-2.3
+0.1
nitrogen source
nitrate (N)
-0.2
-0.4
N.D.
-1.4
+0.4
carbon source
5-Aminovaleric (C)
+0.1
-0.1
N.D.
-1.9
+0.2
carbon source
methyl-beta-D-xylopyranoside (C)
+0.3
-0.2
N.D.
-1.4
-0.3
carbon source
L-Lysine (C)
+0.2
-0.2
N.D.
-1.8
+0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.5
+0.0
N.D.
-1.2
-0.7
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.7
-0.2
N.D.
-1.1
-0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.2
-0.1
N.D.
-1.2
+0.7
stress
Sisomicin 0.004 mg/ml
+0.3
-0.3
N.D.
+1.5
-0.0
stress
D-Cycloserine 0.05 mg/ml
-0.1
-0.1
N.D.
+2.3
-0.1
stress
Cobalt chloride 0.16 mM
+0.1
+0.1
N.D.
+2.6
-0.1
stress
Paraquat dichloride 0.05 mg/ml
-0.1
+0.0
N.D.
+2.6
+0.3
stress
Paraquat dichloride 0.2 mg/ml
+0.1
-0.2
N.D.
+2.9
+0.3
pH
LB, pH8
-0.5
+0.2
N.D.
+4.0
-0.4
pH
LB, pH8
-0.1
-0.0
N.D.
+4.0
-0.1
lb
LB
-0.1
-0.0
N.D.
+3.9
+0.3
lb
LB
-0.1
+0.0
N.D.
+4.0
+0.5
stress
perchlorate 10 mM
+0.1
+0.3
N.D.
+4.4
-0.3
lb
LB
+0.1
-0.1
N.D.
+4.7
+0.3
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