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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa2008 and SMa2009 are separated by 54 nucleotides
SMa2009 and SMa2011 overlap by 4 nucleotides
SMa2011 and SMa2012 are separated by 68 nucleotides
SMa2012 and SMa2014 are separated by 778 nucleotides
SMa2008: SMa2008 - transcriptional regulator, at 1,137,545 to 1,138,150
SMa2008
SMa2009: SMa2009 - hypothetical protein, at 1,138,205 to 1,138,654
SMa2009
SMa2011: SMa2011 - hypothetical protein, at 1,138,651 to 1,138,977
SMa2011
SMa2012: SMa2012 - hypothetical protein, at 1,139,046 to 1,140,725
SMa2012
SMa2014: SMa2014 - transcriptional regulator, at 1,141,504 to 1,141,941
SMa2014
Group
Condition
SMa2008
SMa2009
SMa2011
SMa2012
SMa2014
r2a control
R2A control for volatile experiments
-0.3
-0.6
-0.6
-0.0
-0.0
stress
3-octanone 2.655166667 mM
-0.3
-0.1
-0.4
-0.2
-0.5
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.0
-0.4
-0.4
+0.0
-0.5
stress
Cisplatin 0.0005 mg/ml
-0.2
-0.5
-0.4
-0.1
-0.2
carbon source
methyl 3-keto-a-D-glucopyranoside (C)
-0.4
-0.3
-0.6
+0.0
+0.0
stress
Paraquat dichloride 0.3 mg/ml
-0.5
-0.5
-0.1
+0.0
-0.1
pH
LB, pH8
-0.6
+0.3
-0.3
+0.0
-0.5
nitrogen source
L-Asparagine (N)
-0.4
-0.2
-0.4
-0.1
+0.2
stress
Aluminum chloride
-0.4
-0.5
-0.2
+0.0
+0.1
carbon source
Beta-Lactose (C)
-0.0
-0.6
-0.4
+0.1
-0.0
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.2
-0.5
-0.8
+0.1
+0.5
stress
Paraquat dichloride 0.2 mg/ml
+0.0
+0.2
-0.8
-0.0
-0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.4
-0.1
-0.5
-0.2
+0.3
r2a control
R2A control for volatile experiments
-0.4
+0.1
-0.5
-0.1
+0.2
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.0
-1.1
+0.1
-0.1
+0.3
carbon source
L-Arabinose (C)
-0.2
-0.5
-0.4
+0.0
+0.4
stress
D-Cycloserine 0.05 mg/ml
-0.5
+0.1
-0.2
+0.3
-0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.3
+0.3
-1.0
-0.1
+0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
+0.5
-0.4
+0.1
+0.1
-0.2
stress
Fusidic 0.0001 mg/ml
+0.1
-0.6
+0.6
+0.0
-0.1
carbon source
methyl 3-keto-a-D-glucopyranoside (C)
-0.2
-0.5
+0.6
+0.0
+0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.9
+0.3
-0.6
-0.0
-0.5
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.6
+0.2
-0.7
+0.2
+0.2
nitrogen source
Cytosine (N)
+0.3
+0.4
+0.3
-0.0
-0.3
stress
Cisplatin 0.001 mg/ml
-0.0
+0.2
+0.7
-0.0
-0.3
nutrient
Min media with glucose
-0.0
+0.5
-0.3
+0.1
+0.4
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.5
-0.5
-0.0
+0.7
+0.1
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.3
+0.1
+0.4
+0.5
-0.1
nitrogen source
L-Leucine (N)
+0.3
+0.2
+0.7
-0.0
+0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.5
-0.0
+0.2
+0.1
+0.7
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