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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa2002 and SMa2004 are separated by 59 nucleotides
SMa2004 and SMa2008 are separated by 464 nucleotides
SMa2008 and SMa2009 are separated by 54 nucleotides
SMa2009 and SMa2011 overlap by 4 nucleotides
SMa2002: SMa2002 - hydrolase, at 1,135,285 to 1,135,947
SMa2002
SMa2004: SMa2004 - ROK family transcriptional regulator, at 1,136,007 to 1,137,080
SMa2004
SMa2008: SMa2008 - transcriptional regulator, at 1,137,545 to 1,138,150
SMa2008
SMa2009: SMa2009 - hypothetical protein, at 1,138,205 to 1,138,654
SMa2009
SMa2011: SMa2011 - hypothetical protein, at 1,138,651 to 1,138,977
SMa2011
Group
Condition
SMa2002
SMa2004
SMa2008
SMa2009
SMa2011
carbon source
methyl 3-keto-a-D-glucopyranoside (C)
-0.2
-0.4
-0.4
-0.3
-0.6
stress
Polymyxin B sulfate 0.00005 mg/ml
-0.3
-0.4
+0.0
-1.1
+0.1
stress
Aluminum chloride
-0.5
+0.1
-0.4
-0.5
-0.2
r2a control
R2A control for volatile experiments
+0.0
-0.0
-0.3
-0.6
-0.6
nitrogen source
L-Asparagine (N)
+0.0
-0.3
-0.4
-0.2
-0.4
carbon source
Beta-Lactose (C)
+0.2
-0.3
-0.0
-0.6
-0.4
nitrogen source
L-Arginine (N)
-0.4
-1.0
+0.1
+0.3
-0.1
stress
Cisplatin 0.0005 mg/ml
+0.2
-0.3
-0.2
-0.5
-0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.4
+0.2
+0.0
-0.3
-0.6
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.1
+0.4
-0.2
-0.5
-0.8
carbon source
L-Arabinose (C)
-0.1
+0.2
-0.2
-0.5
-0.4
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.2
-0.2
-0.1
+0.3
-0.5
nitrogen source
L-Histidine (N)
-0.5
-0.1
-0.4
+0.4
-0.1
carbon source
methyl 3-keto-a-D-glucopyranoside (C)
-0.1
-0.4
-0.2
-0.5
+0.6
carbon source
D-Raffinose (C)
-0.2
-0.2
+0.4
-0.3
-0.3
r2a control
R2A control for volatile experiments
-0.1
+0.3
-0.4
+0.1
-0.5
stress
1-octen-3-ol 0.5427293333 mM
-0.5
+0.2
+0.1
+0.1
-0.6
carbon source
Lactulose (C)
+0.4
-0.5
-0.2
-0.4
+0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-0.3
-0.3
+0.5
-0.4
+0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.5
+0.0
-0.4
-0.1
-0.5
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
+0.1
+0.3
+0.3
-1.0
nitrogen source
NAG (N)
+0.1
-0.5
-0.3
+0.2
+0.3
carbon source
Lactitol (C)
+0.4
-0.5
+0.0
-0.3
+0.3
stress
Fusidic 0.0001 mg/ml
-0.2
+0.0
+0.1
-0.6
+0.6
stress
Cisplatin 0.001 mg/ml
-0.4
-0.3
-0.0
+0.2
+0.7
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.1
+0.2
+0.6
+0.2
-0.7
stress
Chlorite 0.1 mM
-0.3
-0.0
+0.4
+0.1
+0.5
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.4
+0.1
+0.9
+0.3
-0.6
nitrogen source
L-Leucine (N)
+0.1
-0.1
+0.3
+0.2
+0.7
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.1
+0.4
+0.3
+0.1
+0.4
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