Fitness for 5 genes in Sinorhizobium meliloti 1021

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500 ntSMa1998 and SMa2000 are separated by 60 nucleotidesSMa2000 and SMa2002 are separated by 250 nucleotidesSMa2002 and SMa2004 are separated by 59 nucleotidesSMa2004 and SMa2008 are separated by 464 nucleotides SMa1998: SMa1998 - ABC transporter ATP-binding protein, at 1,132,404 to 1,133,897 SMa1998 SMa2000: SMa2000 - ABC transporter substrate-binding protein, at 1,133,958 to 1,135,034 SMa2000 SMa2002: SMa2002 - hydrolase, at 1,135,285 to 1,135,947 SMa2002 SMa2004: SMa2004 - ROK family transcriptional regulator, at 1,136,007 to 1,137,080 SMa2004 SMa2008: SMa2008 - transcriptional regulator, at 1,137,545 to 1,138,150 SMa2008
Group Condition SMa1998 SMa2000 SMa2002 SMa2004 SMa2008
nitrogen source L-Arginine (N) -0.2 -0.6 -0.4 -1.0 +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.0 -0.4 +0.3 -0.0 -0.0
stress nitrate 40 mM -0.3 -0.2 +0.1 -0.1 -0.4
stress Paraquat dichloride 0.2 mg/ml -0.8 -0.2 -0.2 +0.1 +0.0
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.6 -0.4 +0.5 +0.0 -0.4
carbon source methyl 3-keto-a-D-glucopyranoside (C) +0.3 -0.1 -0.2 -0.4 -0.4
carbon source D-Trehalose (C) -0.3 +0.2 -0.3 -0.3 -0.2
nitrogen source L-Asparagine (N) +0.4 -0.4 +0.0 -0.3 -0.4
carbon source Xylobiose (C) -0.2 +0.2 -0.2 -0.3 -0.2
stress Chlorite 0.1 mM -0.6 +0.0 -0.3 -0.0 +0.4
carbon source Beta-Lactose (C) -0.3 -0.2 +0.4 -0.3 -0.1
stress D-Cycloserine 0.05 mg/ml -0.0 -0.3 +0.1 +0.2 -0.5
stress Nickel (II) chloride 1 mM -0.3 +0.5 -0.4 -0.1 -0.0
carbon source Lactulose (C) +0.0 -0.0 +0.4 -0.5 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.3 +0.2 -0.3 -0.3 +0.5
stress copper (II) chloride 1 mM -0.3 +0.3 -0.3 +0.3 -0.2
carbon source L-Proline (C) -0.4 +0.3 -0.0 -0.2 +0.2
carbon source methyl 3-keto-a-D-glucopyranoside (C) +0.3 +0.2 -0.1 -0.4 -0.2
carbon source D-Sorbitol (C) +0.1 +0.2 -0.3 +0.3 -0.3
carbon source Lactitol (C) +0.2 -0.1 +0.4 -0.5 +0.0
stress Polymyxin B sulfate 0.00005 mg/ml +0.3 +0.4 -0.3 -0.4 +0.0
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 -0.2 -0.3 -0.2 +0.4
carbon source Xylobiose (C) +0.2 +0.2 +0.4 -0.3 -0.3
nitrogen source Cytosine (N) +0.3 -0.5 +0.1 +0.2 +0.3
in planta Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) -0.2 -0.2 +0.1 +0.4 +0.3
carbon source Mannobiose (C) +0.5 +0.1 +0.3 -0.1 -0.3
carbon source succinate (C) +0.3 -0.3 +0.3 +0.2 +0.2
carbon source methyl-beta-D-xylopyranoside (C) -0.0 +0.5 +0.5 -0.1 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.1 -0.4 +0.4 +0.1 +0.9
carbon source Protocatechuic Acid (C) +0.3 +0.1 +0.4 +0.2 +0.3
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