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Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa1990 and SMa1993 are separated by 372 nucleotides
SMa1993 and SMa1995 are separated by 29 nucleotides
SMa1995 and SMa1996 are separated by 2 nucleotides
SMa1996 and SMa1998 are separated by 16 nucleotides
SMa1990: SMa1990 - hypothetical protein, at 1,129,048 to 1,129,404
SMa1990
SMa1993: SMa1993 - hydrolase, at 1,129,777 to 1,130,433
SMa1993
SMa1995: SMa1995 - ABC transporter permease, at 1,130,463 to 1,131,413
SMa1995
SMa1996: SMa1996 - ABC transporter permease, at 1,131,416 to 1,132,387
SMa1996
SMa1998: SMa1998 - ABC transporter ATP-binding protein, at 1,132,404 to 1,133,897
SMa1998
Group
Condition
SMa1990
SMa1993
SMa1995
SMa1996
SMa1998
agar plate interaction control
Parafilmed volatile agar plate with no fungus
N.D.
-0.2
-0.2
+0.2
-1.0
stress
copper (II) chloride 1 mM
N.D.
-0.9
+0.3
-0.8
+0.1
nitrogen source
L-Arginine (N)
N.D.
-1.1
+0.0
+0.1
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
N.D.
+0.0
-0.5
-0.6
-0.1
stress
Paraquat dichloride 0.2 mg/ml
N.D.
-0.3
-0.0
-0.0
-0.8
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
N.D.
-0.4
-0.4
-0.0
-0.3
stress
Polymyxin B sulfate 0.00005 mg/ml
N.D.
-0.3
-0.5
-0.5
+0.3
carbon source
D-Glucose (C)
N.D.
-0.4
-0.3
+0.0
-0.3
stress
Cisplatin 0.001 mg/ml
N.D.
-0.3
-0.4
-0.3
-0.0
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
N.D.
-0.2
-0.6
+0.3
-0.3
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
N.D.
+0.4
-0.6
-0.5
-0.0
stress
Chlorite 0.1 mM
N.D.
-0.1
-0.2
+0.3
-0.6
nitrogen source
L-Histidine (N)
N.D.
-0.8
+0.2
+0.1
-0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
N.D.
+0.1
-1.1
+0.5
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
N.D.
+0.0
-0.4
+0.2
-0.3
pH
LB, pH6
N.D.
+0.1
+0.3
-0.2
-0.5
carbon source
acetate (C)
N.D.
-0.3
-0.5
+0.2
+0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
N.D.
-0.3
+0.2
+0.1
-0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
N.D.
+0.1
-0.0
+0.3
-0.6
carbon source
D-Mannose (C)
N.D.
-0.2
-0.4
+0.0
+0.4
nitrogen source
Cytosine (N)
N.D.
+0.2
-0.1
-0.3
+0.3
nitrogen source
Uridine (N)
N.D.
-0.1
-0.3
+0.4
+0.2
r2a control
R2A control for volatile experiments
N.D.
+0.3
-0.0
+0.2
-0.4
dmso control
DMSO control
N.D.
+0.2
+0.3
-0.4
+0.1
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
N.D.
+0.2
+0.2
-0.4
+0.3
carbon source
succinate (C)
N.D.
-0.3
+0.3
+0.1
+0.3
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
N.D.
+0.4
+0.1
+0.2
-0.3
carbon source
Xylobiose (C)
N.D.
+0.1
+0.3
+0.3
-0.2
temperature
LB, 23C
N.D.
+0.2
+0.3
+0.3
+0.2
temperature
LB, 30C
N.D.
+0.3
+0.3
+0.1
+0.4
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