Fitness for 5 genes in Sinorhizobium meliloti 1021

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500 ntSMa1987 and SMa1990 are separated by 592 nucleotidesSMa1990 and SMa1993 are separated by 372 nucleotidesSMa1993 and SMa1995 are separated by 29 nucleotidesSMa1995 and SMa1996 are separated by 2 nucleotides SMa1987: SMa1987 - LysR family transcriptional regulator, at 1,127,616 to 1,128,455 SMa1987 SMa1990: SMa1990 - hypothetical protein, at 1,129,048 to 1,129,404 SMa1990 SMa1993: SMa1993 - hydrolase, at 1,129,777 to 1,130,433 SMa1993 SMa1995: SMa1995 - ABC transporter permease, at 1,130,463 to 1,131,413 SMa1995 SMa1996: SMa1996 - ABC transporter permease, at 1,131,416 to 1,132,387 SMa1996
Group Condition SMa1987 SMa1990 SMa1993 SMa1995 SMa1996
stress Polymyxin B sulfate 0.00005 mg/ml -0.3 N.D. -0.3 -0.5 -0.5
nitrogen source Cytosine (N) -1.0 N.D. +0.2 -0.1 -0.3
stress copper (II) chloride 1 mM +0.0 N.D. -0.9 +0.3 -0.8
stress Cisplatin 0.001 mg/ml -0.3 N.D. -0.3 -0.4 -0.3
nitrogen source L-Arginine (N) +0.0 N.D. -1.1 +0.0 +0.1
nitrogen source L-Histidine (N) -0.4 N.D. -0.8 +0.2 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.3 N.D. +0.0 -0.5 -0.6
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.5 N.D. -0.2 -0.2 +0.2
carbon source acetate (C) -0.1 N.D. -0.3 -0.5 +0.2
nitrogen source D-Glucosamine Hydrochloride (N) -0.8 N.D. +0.0 +0.2 -0.0
lb no stress control LB no stress control -0.3 N.D. +0.3 -0.3 -0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.1 N.D. +0.1 -1.1 +0.5
r2a control R2A control for volatile experiments -0.4 N.D. +0.3 -0.3 +0.0
in planta Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) +0.4 N.D. +0.4 -0.6 -0.5
nitrogen source L-Asparagine (N) -0.6 N.D. +0.2 +0.1 +0.1
stress nitrate 40 mM +0.5 N.D. -0.5 -0.0 -0.2
r2a control R2A control +0.3 N.D. +0.1 -0.3 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.4 N.D. -0.2 -0.6 +0.3
carbon source Lactitol (C) +0.5 N.D. -0.4 -0.1 -0.2
dmso control DMSO control -0.1 N.D. +0.2 +0.3 -0.4
temperature LB, 23C -0.3 N.D. +0.1 -0.2 +0.4
r2a control R2A control for volatile experiments -0.4 N.D. +0.3 -0.0 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.3 N.D. +0.0 -0.4 +0.2
volatiles R2A-HEPES with volatiles from Trichoderma atroviridae IMI +0.2 N.D. +0.2 +0.2 -0.4
stress Fusidic 0.0001 mg/ml -0.4 N.D. +0.1 +0.4 +0.2
carbon source succinate (C) +0.3 N.D. -0.3 +0.3 +0.1
in planta Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) +0.4 N.D. +0.3 -0.2 -0.1
carbon source Xylobiose (C) -0.2 N.D. +0.1 +0.3 +0.3
volatiles R2A-HEPES with volatiles from Trichoderma atroviridae IMI -0.2 N.D. +0.4 +0.1 +0.2
r2a-hepes control R2A-HEPES control for volatile experiments +0.5 N.D. +0.2 +0.2 -0.2
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