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Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa1987 and SMa1990 are separated by 592 nucleotides
SMa1990 and SMa1993 are separated by 372 nucleotides
SMa1993 and SMa1995 are separated by 29 nucleotides
SMa1995 and SMa1996 are separated by 2 nucleotides
SMa1987: SMa1987 - LysR family transcriptional regulator, at 1,127,616 to 1,128,455
SMa1987
SMa1990: SMa1990 - hypothetical protein, at 1,129,048 to 1,129,404
SMa1990
SMa1993: SMa1993 - hydrolase, at 1,129,777 to 1,130,433
SMa1993
SMa1995: SMa1995 - ABC transporter permease, at 1,130,463 to 1,131,413
SMa1995
SMa1996: SMa1996 - ABC transporter permease, at 1,131,416 to 1,132,387
SMa1996
Group
Condition
SMa1987
SMa1990
SMa1993
SMa1995
SMa1996
stress
Polymyxin B sulfate 0.00005 mg/ml
-0.3
N.D.
-0.3
-0.5
-0.5
nitrogen source
Cytosine (N)
-1.0
N.D.
+0.2
-0.1
-0.3
stress
copper (II) chloride 1 mM
+0.0
N.D.
-0.9
+0.3
-0.8
stress
Cisplatin 0.001 mg/ml
-0.3
N.D.
-0.3
-0.4
-0.3
nitrogen source
L-Arginine (N)
+0.0
N.D.
-1.1
+0.0
+0.1
nitrogen source
L-Histidine (N)
-0.4
N.D.
-0.8
+0.2
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.3
N.D.
+0.0
-0.5
-0.6
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.5
N.D.
-0.2
-0.2
+0.2
carbon source
acetate (C)
-0.1
N.D.
-0.3
-0.5
+0.2
nitrogen source
D-Glucosamine Hydrochloride (N)
-0.8
N.D.
+0.0
+0.2
-0.0
lb no stress control
LB no stress control
-0.3
N.D.
+0.3
-0.3
-0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.1
N.D.
+0.1
-1.1
+0.5
r2a control
R2A control for volatile experiments
-0.4
N.D.
+0.3
-0.3
+0.0
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.4
N.D.
+0.4
-0.6
-0.5
nitrogen source
L-Asparagine (N)
-0.6
N.D.
+0.2
+0.1
+0.1
stress
nitrate 40 mM
+0.5
N.D.
-0.5
-0.0
-0.2
r2a control
R2A control
+0.3
N.D.
+0.1
-0.3
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
+0.4
N.D.
-0.2
-0.6
+0.3
carbon source
Lactitol (C)
+0.5
N.D.
-0.4
-0.1
-0.2
dmso control
DMSO control
-0.1
N.D.
+0.2
+0.3
-0.4
temperature
LB, 23C
-0.3
N.D.
+0.1
-0.2
+0.4
r2a control
R2A control for volatile experiments
-0.4
N.D.
+0.3
-0.0
+0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.3
N.D.
+0.0
-0.4
+0.2
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
+0.2
N.D.
+0.2
+0.2
-0.4
stress
Fusidic 0.0001 mg/ml
-0.4
N.D.
+0.1
+0.4
+0.2
carbon source
succinate (C)
+0.3
N.D.
-0.3
+0.3
+0.1
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.4
N.D.
+0.3
-0.2
-0.1
carbon source
Xylobiose (C)
-0.2
N.D.
+0.1
+0.3
+0.3
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-0.2
N.D.
+0.4
+0.1
+0.2
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.5
N.D.
+0.2
+0.2
-0.2
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