Fitness for 5 genes in Sinorhizobium meliloti 1021

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500 ntSMa1961 and SMa1963 are separated by 286 nucleotidesSMa1963 and SMa1965 are separated by 138 nucleotidesSMa1965 and SMa1966 are separated by 47 nucleotidesSMa1966 and SMa1967 are separated by 215 nucleotides SMa1961: SMa1961 - polyhydroxybutyrate depolymerase, at 1,115,365 to 1,116,459 SMa1961 SMa1963: SMa1963 - polyketide synthase, at 1,116,746 to 1,117,555 SMa1963 SMa1965: SMa1965 - hypothetical protein, at 1,117,694 to 1,118,170 SMa1965 SMa1966: SMa1966 - LysR family transcriptional regulator, at 1,118,218 to 1,119,327 SMa1966 SMa1967: SMa1967 - short chain alcohol, at 1,119,543 to 1,119,881 SMa1967
Group Condition SMa1961 SMa1963 SMa1965 SMa1966 SMa1967
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.2 -0.1 N.D. -0.2 -0.8
pH LB, pH6 -0.3 -0.3 N.D. -0.3 -0.4
r2a control R2A control for volatile experiments -0.2 -0.5 N.D. -0.1 -0.4
stress Nickel (II) chloride 1 mM -0.2 -0.0 N.D. -0.1 -0.5
carbon source Lactitol (C) +0.0 -0.5 N.D. -0.4 +0.1
nitrogen source Uridine (N) -0.3 -0.1 N.D. -0.5 +0.1
nitrogen source L-Serine (N) -0.0 -0.1 N.D. -0.5 -0.1
stress Cisplatin 0.001 mg/ml -0.2 -0.3 N.D. -0.1 -0.2
r2a control R2A control -0.1 -0.3 N.D. -0.3 +0.1
nutrient L-Histidine -0.2 +0.2 N.D. -0.1 -0.2
stress Polymyxin B sulfate 0.00005 mg/ml -0.1 -0.0 N.D. -0.5 +0.3
temperature LB, 23C +0.1 -0.3 N.D. -0.2 +0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.0 -0.6 N.D. -0.2 +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.3 -0.2 N.D. +0.3 +0.2
nitrogen source L-Leucine (N) +0.2 -0.2 N.D. -0.2 +0.2
nitrogen source L-Arginine (N) -0.2 -0.1 N.D. +0.3 -0.1
carbon source Beta-Lactose (C) +0.1 +0.2 N.D. +0.1 -0.4
carbon source m-Inositol (C) -0.0 +0.3 N.D. +0.2 -0.3
stress Thallium(I) acetate 0.0025 mg/ml +0.1 -0.3 N.D. +0.2 +0.2
stress D-Cycloserine 0.05 mg/ml -0.2 +0.0 N.D. -0.1 +0.5
carbon source L-Arabinose (C) -0.1 +0.3 N.D. -0.2 +0.1
stress 6-Pentyl-2H-pyran-2-one 0.385649 mM -0.1 +0.2 N.D. +0.2 +0.2
stress copper (II) chloride 1 mM +0.1 -0.1 N.D. +0.1 +0.3
carbon source Mannobiose (C) +0.1 -0.2 N.D. +0.3 +0.2
r2a control R2A control -0.1 +0.3 N.D. +0.3 +0.1
stress Thallium(I) acetate 0.001 mg/ml +0.1 -0.0 N.D. +0.1 +0.6
stress nitrate 40 mM +0.0 +0.4 N.D. -0.0 +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 +0.3 N.D. +0.7 -0.3
in planta Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) +0.2 +0.3 N.D. +0.1 +0.3
stress perchlorate 10 mM +0.1 +0.1 N.D. +0.4 +0.7
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