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Protein
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Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa1961 and SMa1963 are separated by 286 nucleotides
SMa1963 and SMa1965 are separated by 138 nucleotides
SMa1965 and SMa1966 are separated by 47 nucleotides
SMa1966 and SMa1967 are separated by 215 nucleotides
SMa1961: SMa1961 - polyhydroxybutyrate depolymerase, at 1,115,365 to 1,116,459
SMa1961
SMa1963: SMa1963 - polyketide synthase, at 1,116,746 to 1,117,555
SMa1963
SMa1965: SMa1965 - hypothetical protein, at 1,117,694 to 1,118,170
SMa1965
SMa1966: SMa1966 - LysR family transcriptional regulator, at 1,118,218 to 1,119,327
SMa1966
SMa1967: SMa1967 - short chain alcohol, at 1,119,543 to 1,119,881
SMa1967
Group
Condition
SMa1961
SMa1963
SMa1965
SMa1966
SMa1967
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-0.2
-0.1
N.D.
-0.2
-0.8
pH
LB, pH6
-0.3
-0.3
N.D.
-0.3
-0.4
r2a control
R2A control for volatile experiments
-0.2
-0.5
N.D.
-0.1
-0.4
stress
Nickel (II) chloride 1 mM
-0.2
-0.0
N.D.
-0.1
-0.5
carbon source
Lactitol (C)
+0.0
-0.5
N.D.
-0.4
+0.1
nitrogen source
Uridine (N)
-0.3
-0.1
N.D.
-0.5
+0.1
nitrogen source
L-Serine (N)
-0.0
-0.1
N.D.
-0.5
-0.1
stress
Cisplatin 0.001 mg/ml
-0.2
-0.3
N.D.
-0.1
-0.2
r2a control
R2A control
-0.1
-0.3
N.D.
-0.3
+0.1
nutrient
L-Histidine
-0.2
+0.2
N.D.
-0.1
-0.2
stress
Polymyxin B sulfate 0.00005 mg/ml
-0.1
-0.0
N.D.
-0.5
+0.3
temperature
LB, 23C
+0.1
-0.3
N.D.
-0.2
+0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.0
-0.6
N.D.
-0.2
+0.5
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.3
-0.2
N.D.
+0.3
+0.2
nitrogen source
L-Leucine (N)
+0.2
-0.2
N.D.
-0.2
+0.2
nitrogen source
L-Arginine (N)
-0.2
-0.1
N.D.
+0.3
-0.1
carbon source
Beta-Lactose (C)
+0.1
+0.2
N.D.
+0.1
-0.4
carbon source
m-Inositol (C)
-0.0
+0.3
N.D.
+0.2
-0.3
stress
Thallium(I) acetate 0.0025 mg/ml
+0.1
-0.3
N.D.
+0.2
+0.2
stress
D-Cycloserine 0.05 mg/ml
-0.2
+0.0
N.D.
-0.1
+0.5
carbon source
L-Arabinose (C)
-0.1
+0.3
N.D.
-0.2
+0.1
stress
6-Pentyl-2H-pyran-2-one 0.385649 mM
-0.1
+0.2
N.D.
+0.2
+0.2
stress
copper (II) chloride 1 mM
+0.1
-0.1
N.D.
+0.1
+0.3
carbon source
Mannobiose (C)
+0.1
-0.2
N.D.
+0.3
+0.2
r2a control
R2A control
-0.1
+0.3
N.D.
+0.3
+0.1
stress
Thallium(I) acetate 0.001 mg/ml
+0.1
-0.0
N.D.
+0.1
+0.6
stress
nitrate 40 mM
+0.0
+0.4
N.D.
-0.0
+0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.1
+0.3
N.D.
+0.7
-0.3
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.2
+0.3
N.D.
+0.1
+0.3
stress
perchlorate 10 mM
+0.1
+0.1
N.D.
+0.4
+0.7
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