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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa1943 and SMa1945 are separated by 12 nucleotides
SMa1945 and SMa1948 are separated by 774 nucleotides
SMa1948 and SMa1951 are separated by 767 nucleotides
SMa1951 and SMa1952 are separated by 124 nucleotides
SMa1943: SMa1943 - transcriptional regulator, at 1,103,712 to 1,104,167
SMa1943
SMa1945: SMa1945 - hypothetical protein, at 1,104,180 to 1,105,040
SMa1945
SMa1948: SMa1948 - Crp family transcriptional regulator, at 1,105,815 to 1,106,531
SMa1948
SMa1951: SMa1951 - hypothetical protein, at 1,107,299 to 1,107,562
SMa1951
SMa1952: SMa1952 - Beta lactamase, at 1,107,687 to 1,108,532
SMa1952
Group
Condition
SMa1943
SMa1945
SMa1948
SMa1951
SMa1952
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.6
+0.4
+0.2
-0.4
-1.7
nitrogen source
NAG (N)
-0.4
-0.4
-0.3
-0.6
-0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.7
-0.1
+0.3
-0.7
-0.5
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.0
-0.6
-0.1
-0.9
+0.1
nitrogen source
L-Asparagine (N)
-0.5
+0.3
-0.1
-0.7
-0.4
stress
copper (II) chloride 1 mM
+0.2
-0.8
-0.0
-0.5
-0.3
nitrogen source
L-Arginine (N)
+0.3
-0.1
-0.0
-0.5
-0.9
nitrogen source
L-Leucine (N)
+0.1
-0.7
+0.1
-0.6
-0.2
stress
6-Pentyl-2H-pyran-2-one 0.4557668333 mM
-0.0
+0.2
-0.1
-0.4
-0.7
stress
Cisplatin 0.0005 mg/ml
-0.8
-0.1
-0.2
-0.4
+0.4
stress
perchlorate 10 mM
-0.3
-0.4
+0.4
-0.6
-0.1
nitrogen source
L-Histidine (N)
-1.2
+0.2
-0.0
-0.1
+0.3
carbon source
D-Trehalose (C)
+0.1
-0.4
-0.4
+0.4
-0.3
carbon source
Methyl beta-D-glucopyranoside (C)
+0.5
-0.2
-0.2
-0.2
-0.3
stress
Thallium(I) acetate 0.001 mg/ml
-0.4
+0.2
+0.1
-0.5
+0.3
stress
Sisomicin 0.004 mg/ml
-0.6
-0.3
-0.0
+0.1
+0.5
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.5
-0.6
+0.3
+0.2
+0.3
nitrogen source
D-Glucosamine Hydrochloride (N)
-0.2
+0.7
+0.1
-0.7
-0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.5
+0.4
+0.0
-0.7
+0.5
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.6
+0.3
+0.2
-0.2
+0.2
stress
Chlorite 0.1 mM
-0.4
-0.2
+0.1
-0.3
+0.7
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.1
+0.0
+0.1
-0.7
+0.4
stress
3-octanone 0.456 mM
-0.6
+0.5
+0.1
+0.2
-0.2
nitrogen source
Cytosine (N)
+0.7
+0.0
+0.2
-0.1
-0.7
pH
LB, pH8
-0.3
-0.5
+0.0
+0.5
+0.5
stress
nitrate 40 mM
+0.3
-0.6
+0.1
-0.1
+0.6
lb
LB
-0.5
+0.8
+0.3
-0.2
-0.0
stress
D-Cycloserine 0.05 mg/ml
+0.4
+0.5
+0.2
-0.3
+0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
+0.6
+0.7
-0.1
-0.4
+0.3
stress
Paraquat dichloride 0.2 mg/ml
+0.1
+0.7
+0.3
-0.0
+0.3
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