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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa1919 and SMa1921 are separated by 748 nucleotides
SMa1921 and SMa1924 are separated by 1132 nucleotides
SMa1924 and SMa1927 are separated by 336 nucleotides
SMa1927 and SMa1929 are separated by 592 nucleotides
SMa1919: SMa1919 - hypothetical protein, at 1,092,557 to 1,092,790
SMa1919
SMa1921: SMa1921 - hypothetical protein, at 1,093,539 to 1,093,883
SMa1921
SMa1924: SMa1924 - hypothetical protein, at 1,095,016 to 1,095,690
SMa1924
SMa1927: SMa1927 - hypothetical protein, at 1,096,027 to 1,097,019
SMa1927
SMa1929: SMa1929 - hypothetical protein, at 1,097,612 to 1,098,121
SMa1929
Group
Condition
SMa1919
SMa1921
SMa1924
SMa1927
SMa1929
nitrogen source
L-Arginine (N)
-0.3
-1.4
-3.7
-0.1
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.2
-3.8
+0.3
-0.3
-0.6
r2a control
R2A control for volatile experiments
-0.1
+0.9
-3.6
-0.2
-1.1
carbon source
Lactitol (C)
+0.0
-0.8
-3.6
+0.0
+0.3
stress
nitrate 40 mM
-0.4
+0.6
-4.1
+0.2
+0.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
-1.1
-1.5
-0.5
-0.5
stress
Aluminum chloride
+0.5
-0.2
-3.7
-0.2
+0.0
carbon source
NAG (C)
-0.2
-0.2
-2.9
+0.2
-0.1
r2a control
R2A control for volatile experiments
-0.1
-2.7
+0.1
-0.2
-0.1
stress
Chlorite 0.1 mM
-0.3
-0.4
-2.1
+0.2
-0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.0
+0.7
-4.0
+0.3
+0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.1
+0.0
-2.6
-0.1
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.0
-3.3
+0.7
+0.1
+0.1
carbon source
palatinose (C)
-0.1
-0.7
-1.8
-0.1
+0.3
stress
Fusidic 0.0001 mg/ml
-0.2
-0.9
-1.3
+0.3
-0.2
pH
LB, pH6
+0.0
+0.7
-3.4
+0.2
+0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.3
-1.2
-0.4
-0.1
-0.6
stress
3-octanone 2.655166667 mM
+0.1
-2.3
-0.1
+0.1
+0.2
lb no stress control
LB no stress control
+0.2
-2.1
+0.2
-0.1
+0.1
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.2
-0.4
-0.5
+0.4
-1.4
nitrogen source
Cytosine (N)
-0.4
+1.2
-1.6
-0.3
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.4
+1.0
-0.7
-0.2
-1.7
carbon source
D-Glucose (C)
-0.0
+1.0
-1.7
-0.0
+0.2
stress
D-Cycloserine 0.05 mg/ml
+0.2
+1.8
-1.8
-0.1
+0.2
stress
Nickel (II) chloride 1 mM
-0.4
+1.9
-0.7
-0.1
-0.2
stress
6-Pentyl-2H-pyran-2-one 0.4177863333 mM
+0.1
-1.0
+1.4
+0.0
+0.2
stress
Paraquat dichloride 0.2 mg/ml
+0.2
+1.0
-1.0
+0.4
+0.1
stress
copper (II) chloride 1 mM
-0.2
+1.6
+0.2
+0.1
-0.9
stress
3-octanone 0.456 mM
+0.4
+0.7
+0.9
+0.2
-0.6
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.9
+0.9
+0.4
+0.2
-0.2
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