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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa1878 and SMa1881 are separated by 526 nucleotides
SMa1881 and SMa1882 are separated by 87 nucleotides
SMa1882 and SMa1884 are separated by 39 nucleotides
SMa1884 and SMa1885 overlap by 4 nucleotides
SMa1878: SMa1878 - transposase, at 1,067,876 to 1,068,031
SMa1878
SMa1881: SMa1881 - hypothetical protein, at 1,068,558 to 1,069,151
SMa1881
SMa1882: SMa1882 - transcriptional activator, at 1,069,239 to 1,069,898
SMa1882
SMa1884: SMa1884 - Cation/multidrug efflux protein, at 1,069,938 to 1,073,048
SMa1884
SMa1885: SMa1885 - membrane efflux protein, at 1,073,045 to 1,074,193
SMa1885
Group
Condition
SMa1878
SMa1881
SMa1882
SMa1884
SMa1885
nitrogen source
L-Arginine (N)
-1.7
+0.0
-1.4
-0.3
-0.3
stress
Cisplatin 0.0005 mg/ml
-0.8
-0.3
-0.6
-0.1
-0.0
r2a control
R2A control for volatile experiments
-0.4
-0.3
-0.6
+0.1
-0.3
stress
copper (II) chloride 1 mM
-0.7
-0.1
-0.3
-0.1
-0.0
nitrogen source
nitrate (N)
-0.8
-0.0
-0.3
-0.2
-0.0
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-0.3
-0.4
-0.6
-0.1
+0.1
stress
nitrate 40 mM
-0.6
+0.0
-0.3
-0.0
-0.3
carbon source
D-Glucose (C)
-0.6
-0.0
-0.6
+0.0
+0.0
nitrogen source
Gly-DL-Asp (N)
-0.5
+0.0
-0.2
-0.1
-0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-1.0
-0.3
+0.4
-0.4
+0.2
r2a control
R2A control for volatile experiments
-0.4
-0.1
-0.6
-0.0
+0.2
stress
Paraquat dichloride 0.3 mg/ml
-0.7
+0.1
-0.5
-0.0
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.4
+0.2
-0.2
+0.0
-0.5
stress
Aluminum chloride
-0.7
+0.1
+0.2
-0.2
-0.3
stress
Chlorite 0.1 mM
-0.6
+0.2
-0.4
+0.0
-0.0
stress
Thallium(I) acetate 0.0025 mg/ml
-0.8
-0.1
+0.2
+0.1
-0.0
stress
Cisplatin 0.001 mg/ml
-1.1
+0.3
-0.1
+0.0
+0.2
nitrogen source
Gelatin (N)
-0.6
+0.2
+0.2
-0.2
-0.2
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.5
-0.2
-0.2
+0.0
+0.3
nutrient
Min media with glucose
-1.0
+0.4
+0.1
+0.0
+0.0
nitrogen source
L-Asparagine (N)
+0.2
+0.4
-0.4
-0.2
-0.4
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-0.5
-0.2
+0.3
-0.0
+0.2
r2a control
R2A control for volatile experiments
+0.3
-0.3
-0.6
+0.0
+0.3
r2a control
R2A control for volatile experiments
-0.2
-0.2
-0.4
+0.2
+0.4
nitrogen source
Uridine (N)
-0.2
-0.1
+0.6
-0.2
-0.2
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.3
-0.1
-0.5
+0.2
+0.2
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.5
-0.2
-0.5
+0.0
+0.2
stress
Polymyxin B sulfate 0.00005 mg/ml
-0.5
+0.3
+0.6
-0.0
-0.0
stress
1-octen-3-ol 0.4933903333 mM
+0.4
-0.2
+0.4
+0.0
+0.1
stress
Paraquat dichloride 0.2 mg/ml
-0.2
+0.3
+0.5
+0.1
+0.2
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