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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa1797 and SMa1798 are separated by 615 nucleotides
SMa1798 and SMa1799 are separated by 639 nucleotides
SMa1799 and SMa1801 are separated by 53 nucleotides
SMa1801 and SMa1803 are separated by 594 nucleotides
SMa1797: SMa1797 - hypothetical protein, at 1,018,587 to 1,018,913
SMa1797
SMa1798: SMa1798 - Kup2 potassium uptake protein, at 1,019,529 to 1,021,430
SMa1798
SMa1799: SMa1799 - TRm2011-2b transposase, at 1,022,070 to 1,022,585
SMa1799
SMa1801: SMa1801 - Reverse transcriptase, maturase, at 1,022,639 to 1,023,898
SMa1801
SMa1803: SMa1803 - TRm2011-2a transposase, at 1,024,493 to 1,024,900
SMa1803
Group
Condition
SMa1797
SMa1798
SMa1799
SMa1801
SMa1803
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.9
-0.2
N.D.
N.D.
N.D.
stress
Paraquat dichloride 0.3 mg/ml
-0.4
-0.4
N.D.
N.D.
N.D.
stress
3-octanone 0.456 mM
-0.5
-0.1
N.D.
N.D.
N.D.
nitrogen source
L-Serine (N)
-0.3
-0.2
N.D.
N.D.
N.D.
nitrogen source
L-Leucine (N)
-0.5
+0.2
N.D.
N.D.
N.D.
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.1
-0.3
N.D.
N.D.
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.3
+0.2
N.D.
N.D.
N.D.
nitrogen source
Cytosine (N)
+0.4
-0.5
N.D.
N.D.
N.D.
nutrient
L-Histidine
+0.2
-0.3
N.D.
N.D.
N.D.
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
+0.2
-0.3
N.D.
N.D.
N.D.
carbon source
D-Xylose (C)
-0.3
+0.2
N.D.
N.D.
N.D.
stress
6-Pentyl-2H-pyran-2-one 0.4177863333 mM
-0.3
+0.3
N.D.
N.D.
N.D.
lb
LB
-0.3
+0.3
N.D.
N.D.
N.D.
stress
Sisomicin 0.004 mg/ml
-0.2
+0.3
N.D.
N.D.
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-0.2
+0.3
N.D.
N.D.
N.D.
stress
Cisplatin 0.0005 mg/ml
-0.2
+0.4
N.D.
N.D.
N.D.
carbon source
Mannobiose (C)
+0.4
-0.2
N.D.
N.D.
N.D.
stress
Cisplatin 0.001 mg/ml
+0.4
-0.2
N.D.
N.D.
N.D.
stress
Paraquat dichloride 0.2 mg/ml
+0.4
-0.2
N.D.
N.D.
N.D.
r2a control
R2A control for volatile experiments
+0.4
-0.2
N.D.
N.D.
N.D.
r2a control
R2A control for volatile experiments
+0.6
-0.3
N.D.
N.D.
N.D.
stress
6-Pentyl-2H-pyran-2-one 0.4177863333 mM
+0.2
+0.3
N.D.
N.D.
N.D.
nitrogen source
L-Asparagine (N)
+0.1
+0.4
N.D.
N.D.
N.D.
stress
3-octanone 0.456 mM
+0.3
+0.3
N.D.
N.D.
N.D.
stress
Paraquat dichloride 0.05 mg/ml
+0.3
+0.2
N.D.
N.D.
N.D.
stress
6-Pentyl-2H-pyran-2-one 0.4177863333 mM
+0.4
+0.2
N.D.
N.D.
N.D.
lb
LB
+0.5
+0.2
N.D.
N.D.
N.D.
stress
D-Cycloserine 0.05 mg/ml
+0.5
+0.2
N.D.
N.D.
N.D.
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.4
+0.4
N.D.
N.D.
N.D.
stress
Chlorite 0.1 mM
+0.5
+0.4
N.D.
N.D.
N.D.
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