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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa5032 and SMa1793 are separated by 383 nucleotides
SMa1793 and SMa1797 are separated by 1224 nucleotides
SMa1797 and SMa1798 are separated by 615 nucleotides
SMa1798 and SMa1799 are separated by 639 nucleotides
SMa5032: SMa5032 - hypothetical protein, at 1,016,374 to 1,016,556
SMa5032
SMa1793: SMa1793 - hypothetical protein, at 1,016,940 to 1,017,362
SMa1793
SMa1797: SMa1797 - hypothetical protein, at 1,018,587 to 1,018,913
SMa1797
SMa1798: SMa1798 - Kup2 potassium uptake protein, at 1,019,529 to 1,021,430
SMa1798
SMa1799: SMa1799 - TRm2011-2b transposase, at 1,022,070 to 1,022,585
SMa1799
Group
Condition
SMa5032
SMa1793
SMa1797
SMa1798
SMa1799
nitrogen source
L-Leucine (N)
-0.5
-0.4
-0.5
+0.2
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.7
-0.1
-0.3
+0.2
N.D.
stress
6-Pentyl-2H-pyran-2-one 0.385649 mM
-1.0
+0.0
+0.1
+0.1
N.D.
lb no stress control
LB no stress control
-0.6
-0.4
+0.2
-0.0
N.D.
carbon source
D-Glucose (C)
-0.4
-0.2
+0.2
-0.2
N.D.
r2a control
R2A control for volatile experiments
-0.6
-0.3
+0.4
-0.2
N.D.
stress
6-Pentyl-2H-pyran-2-one 0.4557668333 mM
-0.8
+0.1
+0.1
+0.1
N.D.
nitrogen source
Cytosine (N)
-0.2
-0.2
+0.4
-0.5
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.5
+0.1
-0.9
-0.2
N.D.
nitrogen source
nitrate (N)
-0.4
+0.4
-0.4
-0.0
N.D.
stress
6-Pentyl-2H-pyran-2-one 0.385649 mM
-0.3
-0.5
+0.3
+0.2
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-1.1
+0.5
+0.1
+0.1
N.D.
stress
Thallium(I) acetate 0.0025 mg/ml
-0.7
+0.4
-0.2
+0.3
N.D.
stress
Nickel (II) chloride 1 mM
+0.6
-0.4
-0.1
-0.2
N.D.
r2a control
R2A control for volatile experiments
-0.3
+0.0
+0.6
-0.3
N.D.
stress
Polymyxin B sulfate 0.00005 mg/ml
-0.2
-0.5
+0.4
+0.4
N.D.
stress
3-octanone 0.456 mM
+0.1
-0.5
+0.3
+0.3
N.D.
stress
Aluminum chloride
+0.8
-0.6
-0.1
+0.1
N.D.
stress
Cisplatin 0.0005 mg/ml
+0.3
-0.3
-0.2
+0.4
N.D.
r2a control
R2A control
+0.3
-0.4
+0.4
+0.0
N.D.
lb
LB
+0.5
+0.1
-0.3
+0.3
N.D.
stress
Chlorite 0.1 mM
+0.1
-0.3
+0.5
+0.4
N.D.
nitrogen source
L-Asparagine (N)
+0.6
-0.5
+0.1
+0.4
N.D.
lb
LB
+0.2
-0.1
+0.5
+0.2
N.D.
carbon source
D-Xylose (C)
+0.7
+0.2
-0.2
+0.1
N.D.
stress
Cisplatin 0.001 mg/ml
-0.0
+0.6
+0.4
-0.2
N.D.
stress
Paraquat dichloride 0.05 mg/ml
+0.2
+0.3
+0.3
+0.2
N.D.
carbon source
methyl-beta-D-xylopyranoside (C)
+0.7
+0.4
+0.1
+0.1
N.D.
stress
D-Cycloserine 0.05 mg/ml
+0.3
+0.3
+0.5
+0.2
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
+1.2
+0.1
-0.2
+0.3
N.D.
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