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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa1761 and SMa1765 are separated by 378 nucleotides
SMa1765 and SMa1766 are separated by 27 nucleotides
SMa1766 and SMa1767 are separated by 786 nucleotides
SMa1767 and SMa1769 are separated by 316 nucleotides
SMa1761: SMa1761 - aminotransferase, at 1,001,791 to 1,003,107
SMa1761
SMa1765: SMa1765 - hypothetical protein, at 1,003,486 to 1,003,971
SMa1765
SMa1766: SMa1766 - hypothetical protein, at 1,003,999 to 1,004,250
SMa1766
SMa1767: SMa1767 - hypothetical protein, at 1,005,037 to 1,005,204
SMa1767
SMa1769: SMa1769 - hypothetical protein, at 1,005,521 to 1,005,829
SMa1769
Group
Condition
SMa1761
SMa1765
SMa1766
SMa1767
SMa1769
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
-3.1
-0.1
N.D.
N.D.
carbon source
L-Alanine (C)
-0.1
-2.6
+0.1
N.D.
N.D.
carbon source
Xylobiose (C)
-0.3
-1.9
-0.1
N.D.
N.D.
carbon source
acetate (C)
+0.0
-2.3
+0.0
N.D.
N.D.
stress
Aluminum chloride
+0.1
-2.0
+0.2
N.D.
N.D.
stress
1-octen-3-ol 0.6030326667 mM
-0.1
-1.5
-0.1
N.D.
N.D.
carbon source
Lactitol (C)
+0.1
-1.5
-0.3
N.D.
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
+0.0
-1.4
-0.3
N.D.
N.D.
lb
LB
-0.0
-1.7
+0.2
N.D.
N.D.
carbon source
D-Cellobiose (C)
-0.1
-1.2
-0.1
N.D.
N.D.
carbon source
Myristic (C)
-0.3
-1.4
+0.2
N.D.
N.D.
stress
Nickel (II) chloride 1 mM
-0.5
-0.5
-0.3
N.D.
N.D.
carbon source
D-Mannose (C)
+0.1
-1.4
+0.0
N.D.
N.D.
carbon source
Beta-Lactose (C)
+0.1
-1.1
-0.2
N.D.
N.D.
stress
1-octen-3-ol 0.6030326667 mM
+0.1
-0.9
-0.2
N.D.
N.D.
stress
3-octanone 5.310333333 mM
+0.1
-0.8
-0.3
N.D.
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.3
-1.2
-0.0
N.D.
N.D.
stress
copper (II) chloride 1 mM
-0.4
-0.7
+0.3
N.D.
N.D.
pH
LB, pH6
-0.2
+0.7
-0.3
N.D.
N.D.
nitrogen source
L-Arginine (N)
-0.2
+0.9
-0.1
N.D.
N.D.
stress
Chlorite 0.1 mM
+0.2
+0.9
-0.2
N.D.
N.D.
nutrient
Min media with glucose
+0.1
+1.0
-0.2
N.D.
N.D.
nitrogen source
nitrate (N)
-0.1
+0.8
+0.3
N.D.
N.D.
nitrogen source
L-Asparagine (N)
+0.3
+1.0
-0.1
N.D.
N.D.
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-0.1
+1.1
+0.4
N.D.
N.D.
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-0.1
+1.2
+0.3
N.D.
N.D.
nitrogen source
Cytosine (N)
+0.3
+1.1
+0.1
N.D.
N.D.
nitrogen source
D-Glucosamine Hydrochloride (N)
+0.3
+1.5
+0.1
N.D.
N.D.
nitrogen source
Gelatin (N)
+0.2
+2.2
-0.2
N.D.
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.3
+1.7
+0.2
N.D.
N.D.
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