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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa1750 and SMa1751 are separated by 382 nucleotides
SMa1751 and SMa1753 are separated by 3 nucleotides
SMa1753 and SMa1754 overlap by 4 nucleotides
SMa1754 and SMa1755 are separated by 98 nucleotides
SMa1750: SMa1750 - hypothetical protein, at 992,912 to 994,291
SMa1750
SMa1751: SMa1751 - ABC transporter permease, at 994,674 to 995,456
SMa1751
SMa1753: SMa1753 - ABC transporter permease, at 995,460 to 996,638
SMa1753
SMa1754: SMa1754 - ABC transporter ATP-binding protein, at 996,635 to 997,714
SMa1754
SMa1755: SMa1755 - ABC transporter substrate-binding protein, at 997,813 to 998,865
SMa1755
Group
Condition
SMa1750
SMa1751
SMa1753
SMa1754
SMa1755
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.0
-0.5
-0.1
-1.4
-0.1
nitrogen source
L-Asparagine (N)
-0.2
-0.1
-0.3
-1.2
+0.1
nitrogen source
L-Histidine (N)
+0.1
-0.3
+0.1
-0.6
-0.4
pH
LB, pH6
-0.2
-0.3
-0.1
-0.3
-0.1
carbon source
Protocatechuic Acid (C)
+0.0
-0.4
+0.0
-0.4
-0.2
pH
LB, pH6
-0.2
-0.3
-0.2
-0.3
+0.1
carbon source
D-Ribose (C)
+0.0
-0.3
+0.1
-0.4
-0.2
carbon source
methyl 3-keto-a-D-glucopyranoside (C)
-0.0
-0.1
+0.2
-0.6
-0.0
carbon source
Xylobiose (C)
-0.0
+0.2
-0.1
-0.6
-0.1
stress
6-Pentyl-2H-pyran-2-one 0.4557668333 mM
-0.3
+0.1
+0.2
-0.2
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.2
+0.1
-0.0
-0.5
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
+0.3
-0.1
+0.4
-0.9
-0.1
carbon source
D-Mannitol (C)
+0.2
-0.4
+0.1
-0.4
+0.1
carbon source
D-Ribose (C)
-0.1
-0.2
+0.2
-0.4
+0.1
stress
3-octanone 2.655166667 mM
-0.3
+0.1
+0.2
-0.1
-0.3
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.4
-0.1
+0.1
+0.3
-0.1
nitrogen source
L-Serine (N)
+0.3
+0.1
-0.2
-0.5
+0.2
carbon source
pipercolic (C)
+0.2
-0.4
+0.1
-0.1
+0.1
stress
Nickel (II) chloride 0.5 mM
+0.2
+0.2
-0.1
-0.5
+0.1
nitrogen source
L-Glutamine (N)
+0.1
-0.1
-0.0
-0.4
+0.4
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.3
+0.2
+0.3
-0.2
+0.0
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.3
+0.0
-0.4
+0.2
+0.0
r2a control
R2A control for volatile experiments
-0.2
-0.1
+0.2
+0.2
+0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.3
-0.1
-0.5
+0.5
+0.3
nitrogen source
nitrate (N)
-0.1
+0.5
+0.2
+0.1
-0.0
stress
Sisomicin 0.004 mg/ml
+0.0
+0.1
-0.2
+0.5
+0.3
carbon source
5-Aminovaleric (C)
+0.2
+0.0
+0.2
+0.3
+0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.4
+0.1
+0.1
+0.1
+0.2
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.0
+0.0
+0.3
+0.9
-0.2
stress
nitrate 40 mM
-0.1
+0.1
+0.2
+0.6
+0.4
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