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Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa1741 and SMa1742 overlap by 1 nucleotides
SMa1742 and SMa1745 overlap by 4 nucleotides
SMa1745 and SMa1746 overlap by 58 nucleotides
SMa1746 and SMa1747 are separated by 292 nucleotides
SMa1741: SMa1741 - ABC transporter ATP-binding protein, at 985,063 to 985,905
SMa1741
SMa1742: SMa1742 - Fe3+-siderophore ABC transporter permease, at 985,905 to 986,942
SMa1742
SMa1745: SMa1745 - ABC transporter permease, Fe3+-siderophore transport system, at 986,939 to 988,039
SMa1745
SMa1746: SMa1746 - ABC transporter substrate-binding protein, at 987,982 to 988,983
SMa1746
SMa1747: SMa1747 - TonB-dependent siderophore receptor, at 989,276 to 991,420
SMa1747
Group
Condition
SMa1741
SMa1742
SMa1745
SMa1746
SMa1747
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
N.D.
-0.4
-0.4
-0.4
-0.1
r2a control
R2A control for volatile experiments
N.D.
-0.3
-0.5
-0.0
-0.2
stress
Nickel (II) chloride 1 mM
N.D.
-0.3
-0.0
-0.3
-0.3
carbon source
Methyl beta-D-glucopyranoside (C)
N.D.
-0.4
-0.4
-0.1
-0.0
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
N.D.
-0.7
-0.3
-0.1
+0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
N.D.
-0.4
-0.3
-0.2
-0.0
stress
3-octanone 0.456 mM
N.D.
-0.4
+0.1
-0.6
+0.0
nutrient
Min media with glucose
N.D.
-0.2
-0.5
+0.1
-0.0
stress
6-Pentyl-2H-pyran-2-one 0.385649 mM
N.D.
-0.1
-0.2
-0.4
+0.1
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
N.D.
+0.1
-0.2
-0.3
-0.2
pH
LB, pH7
N.D.
-0.6
-0.1
+0.1
+0.0
stress
copper (II) chloride 1 mM
N.D.
-0.6
-0.0
+0.0
+0.1
stress
Thallium(I) acetate 0.0025 mg/ml
N.D.
-0.1
-0.6
+0.2
-0.0
stress
Thallium(I) acetate 0.001 mg/ml
N.D.
+0.1
-0.3
-0.3
+0.1
stress
copper (II) chloride 1 mM
N.D.
+0.2
-0.5
-0.1
-0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
N.D.
-0.3
-0.4
+0.4
-0.1
r2a control
R2A control for volatile experiments
N.D.
+0.2
-0.1
-0.3
-0.1
nitrogen source
L-Asparagine (N)
N.D.
-0.6
+0.1
+0.1
+0.2
r2a-hepes control
R2A-HEPES control for volatile experiments
N.D.
+0.3
-0.2
-0.2
-0.1
r2a-hepes control
R2A-HEPES control for volatile experiments
N.D.
+0.4
-0.0
-0.3
-0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
N.D.
-0.4
+0.2
+0.2
-0.0
r2a control
R2A control
N.D.
-0.2
-0.2
+0.3
+0.1
stress
D-Cycloserine 0.05 mg/ml
N.D.
-0.3
+0.0
+0.5
-0.0
stress
Paraquat dichloride 0.2 mg/ml
N.D.
-0.2
+0.2
+0.3
-0.0
carbon source
L-Alanine (C)
N.D.
+0.5
-0.2
-0.1
-0.0
nitrogen source
D-Glucosamine Hydrochloride (N)
N.D.
-0.0
-0.2
+0.3
+0.2
nitrogen source
L-Arginine (N)
N.D.
+0.3
+0.2
-0.2
-0.1
stress
Chlorite 0.1 mM
N.D.
+0.7
-0.2
+0.3
-0.1
r2a control
R2A control
N.D.
+0.4
+0.2
+0.2
-0.0
stress
Polymyxin B sulfate 0.00005 mg/ml
N.D.
+0.6
+0.1
+0.2
-0.0
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