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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa1674 and SMa1675 overlap by 2 nucleotides
SMa1675 and SMa1676 are separated by 60 nucleotides
SMa1676 and SMa1677 are separated by 84 nucleotides
SMa1677 and SMa1678 are separated by 280 nucleotides
SMa1674: SMa1674 - hypothetical protein, at 938,993 to 939,304
SMa1674
SMa1675: SMa1675 - hypothetical protein, at 939,303 to 939,953
SMa1675
SMa1676: SMa1676 - hypothetical protein, at 940,014 to 941,072
SMa1676
SMa1677: SMa1677 - Metallo-dependent hydrolase, at 941,157 to 942,590
SMa1677
SMa1678: SMa1678 - hypothetical protein, at 942,871 to 943,152
SMa1678
Group
Condition
SMa1674
SMa1675
SMa1676
SMa1677
SMa1678
nitrogen source
L-Arginine (N)
-0.4
-0.5
+0.0
-0.4
N.D.
stress
6-Pentyl-2H-pyran-2-one 0.4177863333 mM
-0.6
-0.2
-0.1
-0.2
N.D.
dmso control
DMSO control
-0.4
-0.4
+0.1
-0.3
N.D.
stress
1-octen-3-ol 0.5427293333 mM
-0.4
-0.2
-0.2
-0.2
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-0.8
-0.0
+0.2
-0.3
N.D.
stress
6-Pentyl-2H-pyran-2-one 0.4177863333 mM
-0.5
-0.0
-0.2
-0.3
N.D.
stress
Polymyxin B sulfate 0.00005 mg/ml
-1.0
-0.1
+0.2
-0.1
N.D.
stress
6-Pentyl-2H-pyran-2-one 0.385649 mM
-0.6
+0.1
-0.1
-0.3
N.D.
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.5
-0.2
-0.0
-0.2
N.D.
stress
3-octanone 0.456 mM
-0.4
-0.2
+0.1
-0.3
N.D.
stress
1-octen-3-ol 0.4933903333 mM
-0.6
+0.2
-0.1
-0.2
N.D.
stress
3-octanone 2.655166667 mM
-0.6
+0.1
+0.1
-0.3
N.D.
nitrogen source
NAG (N)
-0.9
+0.2
+0.2
+0.0
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.5
-0.2
+0.1
+0.2
N.D.
nitrogen source
L-Asparagine (N)
+0.3
-0.3
-0.1
-0.4
N.D.
nitrogen source
D-Glucosamine Hydrochloride (N)
-0.4
+0.1
+0.2
-0.3
N.D.
stress
Paraquat dichloride 0.05 mg/ml
-0.4
+0.3
+0.1
-0.2
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.6
+0.0
+0.1
+0.4
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.8
+0.0
+0.2
+0.4
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.2
-0.3
-0.0
+0.5
N.D.
stress
copper (II) chloride 1 mM
-0.5
+0.2
-0.1
+0.4
N.D.
stress
Paraquat dichloride 0.3 mg/ml
-0.2
+0.1
-0.3
+0.3
N.D.
carbon source
Lactitol (C)
+0.2
+0.3
-0.1
-0.3
N.D.
nitrogen source
Uridine (N)
-0.3
+0.4
+0.2
-0.2
N.D.
nitrogen source
L-Serine (N)
-0.3
+0.5
+0.0
-0.1
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.4
-0.0
+0.0
+0.6
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.1
+0.1
+0.3
+0.4
N.D.
carbon source
pyruvate (C)
+0.2
+0.4
+0.2
-0.1
N.D.
stress
perchlorate 10 mM
+0.2
+0.3
+0.1
+0.3
N.D.
carbon source
L-Arabinose (C)
+0.4
+0.2
+0.2
+0.3
N.D.
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