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Protein
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Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa1620 and SMa1623 are separated by 149 nucleotides
SMa1623 and SMa1625 are separated by 217 nucleotides
SMa1625 and SMa1626 are separated by 104 nucleotides
SMa1626 and SMa1629 are separated by 140 nucleotides
SMa1620: SMa1620 - integrase/recombinase, at 903,254 to 904,243
SMa1620
SMa1623: SMa1623 - transposase, fragment, at 904,393 to 904,767
SMa1623
SMa1625: SMa1625 - LysR family transcriptional regulator, at 904,985 to 905,908
SMa1625
SMa1626: SMa1626 - hypothetical protein, at 906,013 to 906,672
SMa1626
SMa1629: SMa1629 - short chain dehydrogenase, at 906,813 to 907,592
SMa1629
Group
Condition
SMa1620
SMa1623
SMa1625
SMa1626
SMa1629
stress
copper (II) chloride 1 mM
N.D.
N.D.
-2.8
-0.4
-0.2
nitrogen source
L-Histidine (N)
N.D.
N.D.
-2.2
-0.5
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
N.D.
N.D.
-0.0
-1.5
-0.2
stress
Thallium(I) acetate 0.001 mg/ml
N.D.
N.D.
-1.2
-0.2
-0.2
pH
LB, pH6
N.D.
N.D.
-0.3
-0.6
-0.6
r2a control
R2A control for volatile experiments
N.D.
N.D.
-0.8
+0.1
-0.5
nutrient
Min media with glucose
N.D.
N.D.
-0.5
-0.4
-0.3
temperature
LB, 30C
N.D.
N.D.
-0.6
-0.5
+0.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
N.D.
N.D.
-0.8
-0.5
+0.2
carbon source
Protocatechuic Acid (C)
N.D.
N.D.
-0.9
+0.1
-0.2
carbon source
L-Malic (C)
N.D.
N.D.
-1.0
+0.3
-0.0
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
N.D.
N.D.
-0.2
-0.6
+0.3
carbon source
Maltitol (C)
N.D.
N.D.
-0.6
-0.2
+0.4
nitrogen source
L-Glutamine (N)
N.D.
N.D.
-0.6
+0.4
+0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
N.D.
N.D.
-0.6
-0.0
+0.6
nitrogen source
L-Arginine (N)
N.D.
N.D.
+0.5
-0.6
+0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
N.D.
N.D.
-0.4
-0.2
+0.7
carbon source
Xylobiose (C)
N.D.
N.D.
+0.3
+0.4
-0.6
stress
Paraquat dichloride 0.2 mg/ml
N.D.
N.D.
-0.3
+0.3
+0.5
lb no stress control
LB no stress control
N.D.
N.D.
+0.9
-0.5
+0.1
r2a-hepes control
R2A-HEPES control for volatile experiments
N.D.
N.D.
+0.8
-0.2
+0.1
stress
Cisplatin 0.0005 mg/ml
N.D.
N.D.
+1.1
-0.3
-0.1
stress
6-Pentyl-2H-pyran-2-one 0.385649 mM
N.D.
N.D.
+0.3
+0.7
-0.3
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
N.D.
N.D.
+0.7
+0.3
-0.2
stress
6-Pentyl-2H-pyran-2-one 0.4177863333 mM
N.D.
N.D.
+1.0
+0.1
-0.3
stress
6-Pentyl-2H-pyran-2-one 0.385649 mM
N.D.
N.D.
+0.8
+0.2
-0.1
stress
Polymyxin B sulfate 0.00005 mg/ml
N.D.
N.D.
+0.9
+0.2
-0.1
r2a-hepes control
R2A-HEPES control for volatile experiments
N.D.
N.D.
+0.7
+0.4
-0.1
stress
6-Pentyl-2H-pyran-2-one 0.4557668333 mM
N.D.
N.D.
+0.7
+0.4
+0.1
nitrogen source
L-Asparagine (N)
N.D.
N.D.
+0.9
+0.4
+0.3
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