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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa1595 and SMa1597 are separated by 449 nucleotides
SMa1597 and SMa1600 are separated by 128 nucleotides
SMa1600 and SMa1602 are separated by 279 nucleotides
SMa1602 and SMa1604 are separated by 83 nucleotides
SMa1595: SMa1595 - hypothetical protein, at 890,034 to 890,477
SMa1595
SMa1597: SMa1597 - Pilus assembly chaperone, at 890,927 to 891,709
SMa1597
SMa1600: SMa1600 - Potassium efflux protein, at 891,838 to 893,592
SMa1600
SMa1602: SMa1602 - LysR family transcriptional regulator, at 893,872 to 894,747
SMa1602
SMa1604: SMa1604 - NADH:flavin oxidoreductase / NADH oxidase, at 894,831 to 895,922
SMa1604
Group
Condition
SMa1595
SMa1597
SMa1600
SMa1602
SMa1604
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.3
-3.9
-0.1
+0.3
-0.6
dmso control
DMSO control
-0.3
-1.3
-0.2
-0.1
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-1.3
+0.3
-0.5
-0.2
-0.0
r2a control
R2A control for volatile experiments
-0.3
-0.1
-0.3
-0.7
-0.3
lb no stress control
LB no stress control
-0.2
-1.0
-0.3
+0.0
-0.1
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.9
-0.3
-0.1
-0.4
+0.1
stress
1-octen-3-ol 0.5427293333 mM
-0.5
-0.6
-0.3
+0.1
+0.1
stress
1-octen-3-ol 0.5427293333 mM
-1.1
-0.1
-0.1
+0.1
+0.2
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.7
+0.2
-0.2
-0.3
+0.1
stress
Aluminum chloride
-0.8
-0.4
+0.1
+0.4
-0.2
r2a control
R2A control for volatile experiments
-0.6
-0.1
+0.2
-0.4
+0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.5
+0.5
+0.1
-0.3
-0.6
nutrient
Min media with glucose
-0.6
+0.4
+0.1
-0.4
-0.1
lb no stress control
LB no stress control
-0.8
+0.4
-0.1
-0.2
+0.2
stress
Cobalt chloride 0.16 mM
-1.1
+0.3
+0.1
+0.3
-0.1
stress
6-Pentyl-2H-pyran-2-one 0.4177863333 mM
-0.6
-0.1
-0.4
+0.6
+0.1
carbon source
L-Arabinose (C)
-0.7
+0.3
+0.3
+0.2
-0.3
stress
3-octanone 5.310333333 mM
-0.5
+0.6
-0.2
+0.4
-0.1
stress
Paraquat dichloride 0.2 mg/ml
-0.5
+0.4
+0.3
+0.3
-0.0
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.5
+0.5
+0.0
+0.0
-0.4
carbon source
acetate (C)
-0.1
+0.9
-0.3
+0.3
+0.0
nitrogen source
Uridine (N)
+0.3
+0.9
+0.2
-0.3
-0.1
nitrogen source
D-Glucosamine Hydrochloride (N)
+0.5
+0.8
-0.0
-0.0
-0.3
lb
LB
+0.2
+0.5
-0.2
+0.6
-0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.1
+0.9
+0.1
+0.3
-0.3
stress
nitrate 40 mM
-0.2
+0.8
+0.4
+0.1
+0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.1
+0.7
+0.1
+0.7
-0.6
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.2
+0.5
+0.2
+0.4
+0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.4
+1.4
+0.0
-0.2
-0.2
nitrogen source
L-Histidine (N)
+0.6
+1.0
+0.2
-0.3
+0.2
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