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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa1576 and SMa1578 are separated by 42 nucleotides
SMa1578 and SMa1579 are separated by 259 nucleotides
SMa1579 and SMa1580 are separated by 112 nucleotides
SMa1580 and SMa1582 are separated by 98 nucleotides
SMa1576: SMa1576 - CpaB2 pilus assembly protein, at 871,597 to 872,388
SMa1576
SMa1578: SMa1578 - CpaA2 pilus assembly protein, at 872,431 to 872,943
SMa1578
SMa1579: SMa1579 - hypothetical protein, at 873,203 to 874,498
SMa1579
SMa1580: SMa1580 - hypothetical protein, at 874,611 to 875,123
SMa1580
SMa1582: SMa1582 - hypothetical protein, at 875,222 to 876,520
SMa1582
Group
Condition
SMa1576
SMa1578
SMa1579
SMa1580
SMa1582
stress
Cisplatin 0.001 mg/ml
-0.5
-0.5
-0.2
N.D.
+0.2
stress
Cisplatin 0.0005 mg/ml
-0.2
-0.6
-0.1
N.D.
-0.1
stress
copper (II) chloride 1 mM
-0.4
-0.6
+0.0
N.D.
-0.1
stress
Paraquat dichloride 0.2 mg/ml
-1.1
-0.1
+0.1
N.D.
+0.2
stress
Nickel (II) chloride 1 mM
-0.7
-0.1
-0.0
N.D.
-0.1
stress
Thallium(I) acetate 0.001 mg/ml
-0.1
-0.5
-0.2
N.D.
-0.2
stress
copper (II) chloride 1 mM
-0.7
-0.4
+0.2
N.D.
-0.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.6
-0.1
-0.1
N.D.
-0.0
r2a control
R2A control for volatile experiments
+0.1
-0.6
-0.2
N.D.
-0.0
stress
Thallium(I) acetate 0.0025 mg/ml
-0.3
-0.6
+0.2
N.D.
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
+0.1
+0.0
-0.5
N.D.
-0.4
nitrogen source
Uridine (N)
+0.2
-0.4
-0.3
N.D.
-0.1
stress
Fusidic 0.0001 mg/ml
-0.6
+0.1
-0.2
N.D.
-0.0
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.4
-0.4
-0.2
N.D.
+0.3
lb
LB
-0.7
-0.1
+0.2
N.D.
+0.1
pH
LB, pH8
-0.4
-0.3
-0.1
N.D.
+0.1
stress
Sisomicin 0.004 mg/ml
-0.1
-0.5
-0.1
N.D.
+0.1
pH
LB, pH6
-0.5
+0.4
-0.2
N.D.
-0.0
stress
D-Cycloserine 0.05 mg/ml
-0.4
-0.2
+0.0
N.D.
+0.2
lb
LB
-0.4
-0.2
-0.1
N.D.
+0.2
nitrogen source
D-Glucosamine Hydrochloride (N)
-0.6
+0.4
-0.0
N.D.
-0.1
pH
LB, pH7
-0.5
+0.2
-0.1
N.D.
+0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.2
+0.3
-0.2
N.D.
-0.1
nitrogen source
Cytosine (N)
-0.5
+0.5
-0.1
N.D.
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.6
+0.3
-0.1
N.D.
+0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.5
+0.5
+0.0
N.D.
+0.2
nitrogen source
L-Leucine (N)
-0.2
+0.6
-0.1
N.D.
-0.1
dmso control
DMSO control
-0.1
+0.4
-0.1
N.D.
+0.2
nitrogen source
L-Asparagine (N)
-0.0
+0.6
-0.2
N.D.
+0.3
nitrogen source
NAG (N)
+0.5
+0.4
-0.2
N.D.
+0.0
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