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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa1501 and SMa1503 are separated by 30 nucleotides
SMa1503 and SMa1505 are separated by 216 nucleotides
SMa1505 and SMa1507 are separated by 53 nucleotides
SMa1507 and SMa1509 are separated by 84 nucleotides
SMa1501: SMa1501 - hypothetical protein, at 828,355 to 829,269
SMa1501
SMa1503: SMa1503 - hypothetical protein, at 829,300 to 830,166
SMa1503
SMa1505: SMa1505 - GntR family transcriptional regulator, at 830,383 to 831,168
SMa1505
SMa1507: SMa1507 - hypothetical protein, at 831,222 to 832,316
SMa1507
SMa1509: SMa1509 - ATP transporter ATP-binding protein, at 832,401 to 833,936
SMa1509
Group
Condition
SMa1501
SMa1503
SMa1505
SMa1507
SMa1509
stress
Sisomicin 0.004 mg/ml
+0.1
-0.1
-0.5
-0.2
-0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
+0.1
-0.2
+0.0
-0.3
-0.5
carbon source
Beta-Lactose (C)
-0.1
-0.1
-0.2
-0.1
-0.3
stress
Cisplatin 0.0005 mg/ml
-0.2
-0.2
-0.1
+0.2
-0.5
carbon source
acetate (C)
-0.0
+0.1
-0.8
-0.2
+0.2
carbon source
Myristic (C)
+0.0
+0.1
-0.4
-0.1
-0.3
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-0.0
-0.4
-0.4
+0.1
+0.2
stress
Thallium(I) acetate 0.0025 mg/ml
-0.2
-0.2
-0.1
+0.4
-0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.2
-0.1
-0.4
-0.1
+0.4
pH
LB, pH6
-0.2
-0.1
+0.2
-0.3
-0.0
nitrogen source
L-Asparagine (N)
-0.3
+0.2
-0.1
-0.2
+0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.0
-0.3
-0.2
+0.5
-0.0
nitrogen source
Cytosine (N)
-0.3
+0.1
-0.1
-0.1
+0.5
r2a control
R2A control for volatile experiments
-0.0
-0.1
-0.2
+0.3
+0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.2
+0.1
-0.3
-0.0
+0.6
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.1
-0.3
-0.0
+0.4
-0.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
+0.0
-0.4
+0.1
+0.6
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.1
+0.2
-0.1
-0.2
+0.4
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.2
+0.1
-0.2
-0.1
+0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.2
-0.2
-0.2
+0.0
+0.5
r2a control
R2A control for volatile experiments
+0.1
-0.2
-0.2
+0.2
+0.4
dmso control
DMSO control
+0.2
-0.1
-0.2
+0.4
+0.2
stress
Aluminum chloride
+0.0
+0.4
-0.2
+0.2
+0.1
r2a control
R2A control for volatile experiments
+0.2
-0.1
+0.1
+0.4
+0.1
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.0
+0.1
-0.2
+0.3
+0.4
temperature
LB, 23C
-0.1
+0.2
+0.3
-0.0
+0.3
stress
3-octanone 2.655166667 mM
+0.2
+0.1
-0.0
+0.3
+0.3
stress
D-Cycloserine 0.05 mg/ml
+0.1
+0.3
+0.3
+0.2
-0.0
stress
perchlorate 10 mM
+0.1
-0.0
+0.2
+0.1
+0.7
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.1
+0.0
-0.0
+0.5
+0.7
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