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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa1362 and SMa1363 overlap by 4 nucleotides
SMa1363 and SMa1364 are separated by 63 nucleotides
SMa1364 and SMa5008 are separated by 269 nucleotides
SMa5008 and SMa1365 are separated by 192 nucleotides
SMa1362: SMa1362 - inner-membrane permease, at 746,199 to 747,599
SMa1362
SMa1363: SMa1363 - ABC transporter permease, at 747,596 to 748,684
SMa1363
SMa1364: SMa1364 - ABC transporter substrate-binding protein, at 748,748 to 749,968
SMa1364
SMa5008: SMa5008 - hypothetical protein, at 750,238 to 750,459
SMa5008
SMa1365: SMa1365 - ATP-binding protein, at 750,652 to 751,026
SMa1365
Group
Condition
SMa1362
SMa1363
SMa1364
SMa5008
SMa1365
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-0.1
+0.1
-0.3
-0.6
-3.6
nitrogen source
NAG (N)
-0.1
-0.2
-0.2
-0.2
-3.8
stress
Paraquat dichloride 0.3 mg/ml
-0.0
+0.1
+0.3
-0.2
-4.3
stress
Thallium(I) acetate 0.0025 mg/ml
-0.2
+0.1
-0.0
-0.2
-2.4
nitrogen source
L-Serine (N)
+0.1
+0.1
-0.2
+0.1
-2.5
stress
copper (II) chloride 1 mM
-0.3
-0.2
+0.0
+0.3
-1.9
stress
3-octanone 0.456 mM
-0.1
-0.2
-0.2
-0.3
-1.4
carbon source
5-Aminovaleric (C)
-0.2
-0.1
+0.0
-0.1
-1.7
carbon source
methyl 3-keto-a-D-glucopyranoside (C)
-0.0
+0.1
+0.1
-0.2
-1.9
stress
nitrate 40 mM
+0.0
+0.1
+0.1
-0.3
-1.8
r2a control
R2A control
+0.1
+0.2
-0.0
-0.2
-1.8
r2a control
R2A control for volatile experiments
-0.5
-0.0
-0.3
-0.4
-0.6
stress
Thallium(I) acetate 0.001 mg/ml
-0.3
-0.1
+0.0
-0.0
-1.5
stress
1-octen-3-ol 0.4933903333 mM
+0.0
+0.1
-0.0
+0.2
-1.9
carbon source
acetate (C)
-0.1
+0.1
+0.1
+0.1
-1.7
nitrogen source
L-Glutamine (N)
+0.2
+0.1
-0.2
-0.0
-1.6
carbon source
Methyl beta-D-glucopyranoside (C)
+0.2
-0.1
-0.0
+0.1
-1.3
carbon source
Methyl beta-D-glucopyranoside (C)
-0.0
-0.1
-0.1
+0.4
-1.2
carbon source
succinate (C)
+0.1
+0.3
-0.0
-0.1
-1.3
nutrient
L-Histidine
+0.0
+0.2
-0.3
+0.2
-1.2
carbon source
methyl-beta-D-xylopyranoside (C)
+0.2
+0.1
-0.0
+0.3
-1.5
stress
6-Pentyl-2H-pyran-2-one 0.4177863333 mM
-0.2
-0.1
-0.3
-0.3
+1.0
stress
6-Pentyl-2H-pyran-2-one 0.4557668333 mM
-0.3
-0.3
-0.0
+0.0
+1.2
stress
3-octanone 5.310333333 mM
-0.0
-0.0
-0.0
-0.4
+1.5
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.1
-0.2
+0.2
-0.1
+1.2
stress
Aluminum chloride
+0.2
-0.2
+0.3
+0.0
+1.0
carbon source
Lactitol (C)
-0.1
-0.0
+0.1
-0.1
+1.8
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.1
+0.2
+0.0
+0.2
+1.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
-0.3
-0.0
-0.1
+2.3
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.3
+0.3
+0.3
-0.2
+2.3
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