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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa1329 and SMa1331 are separated by 34 nucleotides
SMa1331 and SMa1332 are separated by 29 nucleotides
SMa1332 and SMa1334 are separated by 11 nucleotides
SMa1334 and SMa5030 are separated by 81 nucleotides
SMa1329: SMa1329 - Peptidase, at 726,444 to 727,706
SMa1329
SMa1331: SMa1331 - hypothetical protein, at 727,741 to 728,154
SMa1331
SMa1332: SMa1332 - hypothetical protein, at 728,184 to 729,026
SMa1332
SMa1334: SMa1334 - hypothetical protein, at 729,038 to 730,234
SMa1334
SMa5030: SMa5030 - TetR family transcriptional regulator, at 730,316 to 730,981
SMa5030
Group
Condition
SMa1329
SMa1331
SMa1332
SMa1334
SMa5030
nutrient
L-Histidine
-0.1
-0.2
+0.1
-0.4
-0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.2
-0.3
+0.1
-0.4
+0.1
stress
Chloride 200 mM
-0.2
+0.3
-0.1
-0.1
-0.5
pH
LB, pH6
-0.1
+0.1
-0.3
+0.3
-0.5
carbon source
L-Arabinose (C)
-0.2
-0.1
-0.2
-0.2
+0.3
nitrogen source
L-Serine (N)
-0.4
-0.1
+0.2
-0.3
+0.3
nitrogen source
L-Arginine (N)
-0.1
-0.6
+0.3
+0.1
-0.1
nitrogen source
D-Glucosamine Hydrochloride (N)
+0.0
+0.3
+0.1
-0.4
-0.3
stress
copper (II) chloride 1 mM
+0.3
+0.1
-0.4
-0.1
-0.1
stress
Cisplatin 0.0005 mg/ml
-0.3
+0.0
-0.4
-0.2
+0.6
nitrogen source
L-Histidine (N)
-0.4
+0.1
-0.3
+0.1
+0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.6
-0.2
+0.2
+0.4
+0.1
carbon source
methyl-beta-D-xylopyranoside (C)
+0.4
+0.1
-0.0
-0.3
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
+0.3
+0.4
-0.3
-0.0
-0.4
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.3
-0.0
-0.1
+0.8
-0.8
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.1
+0.2
-0.1
+0.4
-0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.3
-0.1
+0.2
+0.7
-0.9
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.1
-0.4
-0.3
+0.8
+0.2
stress
Aluminum chloride
+0.0
-0.1
-0.1
+0.6
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.5
+0.1
+0.1
+0.4
+0.2
stress
Chlorite 0.1 mM
-0.2
+0.1
-0.1
+0.2
+0.5
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.2
+0.3
-0.1
+0.5
+0.0
stress
Paraquat dichloride 0.05 mg/ml
+0.1
-0.2
+0.0
+0.2
+0.4
stress
perchlorate 10 mM
-0.2
+0.3
+0.2
+0.1
+0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.2
+0.3
+0.4
+0.4
-0.1
stress
Paraquat dichloride 0.2 mg/ml
+0.2
+0.0
-0.1
+0.5
+0.3
stress
6-Pentyl-2H-pyran-2-one 0.385649 mM
+0.2
+0.3
+0.3
+0.2
+0.0
stress
6-Pentyl-2H-pyran-2-one 0.385649 mM
+0.2
+0.5
+0.2
+0.2
+0.1
stress
Polymyxin B sulfate 0.00005 mg/ml
-0.1
+0.4
-0.2
+0.9
+0.3
nitrogen source
L-Asparagine (N)
+0.2
+0.2
+0.1
+0.1
+0.9
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