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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa1294 and SMa1296 are separated by 495 nucleotides
SMa1296 and SMa1297 are separated by 247 nucleotides
SMa1297 and SMa1299 are separated by 251 nucleotides
SMa1299 and SMa1301 are separated by 34 nucleotides
SMa1294: SMa1294 - hypothetical protein, at 705,913 to 706,359
SMa1294
SMa1296: SMa1296 - alcohol dehydrogenase, at 706,855 to 707,877
SMa1296
SMa1297: SMa1297 - hypothetical protein, at 708,125 to 708,802
SMa1297
SMa1299: SMa1299 - TetR family transcriptional regulator, at 709,054 to 709,665
SMa1299
SMa1301: SMa1301 - Permease, at 709,700 to 710,926
SMa1301
Group
Condition
SMa1294
SMa1296
SMa1297
SMa1299
SMa1301
agar plate interaction control
Parafilmed volatile agar plate with no fungus
N.D.
+0.0
-1.9
+0.1
-0.0
stress
Thallium(I) acetate 0.0025 mg/ml
N.D.
-0.4
-1.2
+0.2
-0.3
stress
Cisplatin 0.0005 mg/ml
N.D.
-0.2
-0.8
-0.0
-0.4
carbon source
pipercolic (C)
N.D.
-0.5
-0.9
-0.1
+0.1
carbon source
Methyl beta-D-glucopyranoside (C)
N.D.
-0.1
-1.1
+0.1
-0.2
carbon source
Lactitol (C)
N.D.
-0.8
-0.6
-0.1
+0.2
carbon source
D-Ribose (C)
N.D.
-0.3
-0.8
+0.1
+0.0
nitrogen source
L-Histidine (N)
N.D.
-0.1
-0.8
+0.2
-0.4
carbon source
L-Alanine (C)
N.D.
-0.7
-0.4
+0.1
-0.0
carbon source
L-Alanine (C)
N.D.
-0.6
-0.4
+0.1
+0.0
carbon source
Lactulose (C)
N.D.
-0.6
-0.5
+0.2
+0.1
carbon source
D-Ribose (C)
N.D.
-0.4
-0.5
+0.0
+0.1
r2a control
R2A control for volatile experiments
N.D.
+0.2
-0.1
-0.3
-0.5
nutrient
Min media with glucose
N.D.
-0.1
-1.0
+0.3
+0.0
carbon source
Lactitol (C)
N.D.
-0.3
-0.7
+0.3
-0.0
stress
Nickel (II) chloride 1 mM
N.D.
-0.3
-0.8
+0.2
+0.4
carbon source
D-Salicin (C)
N.D.
-0.9
+0.1
+0.2
+0.0
nitrogen source
nitrate (N)
N.D.
-0.2
+0.2
+0.3
-0.5
carbon source
L-Histidine (C)
N.D.
-0.8
+0.4
+0.2
+0.0
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
N.D.
+0.5
-0.7
-0.0
+0.1
stress
copper (II) chloride 1 mM
N.D.
+0.4
-0.4
+0.3
-0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
N.D.
+0.1
-0.5
+0.2
+0.3
stress
1-octen-3-ol 0.6030326667 mM
N.D.
+0.1
+0.6
-0.4
-0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
N.D.
-0.2
+0.8
-0.1
-0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
N.D.
+0.7
-0.6
+0.2
+0.0
lb
LB
N.D.
-0.2
+0.7
+0.2
-0.2
stress
3-octanone 2.655166667 mM
N.D.
+0.1
+0.8
-0.2
-0.2
nitrogen source
Gelatin (N)
N.D.
+0.4
+0.3
+0.4
-0.1
stress
Chlorite 0.1 mM
N.D.
-0.2
+0.7
+0.1
+0.2
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
N.D.
-0.1
+1.2
+0.1
+0.1
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