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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa1272 and SMa1273 are separated by 59 nucleotides
SMa1273 and SMa1276 are separated by 24 nucleotides
SMa1276 and SMa1279 are separated by 458 nucleotides
SMa1279 and SMa1283 are separated by 685 nucleotides
SMa1272: SMa1272 - NorQ accessory protein for nitric oxide reductase, at 695,808 to 696,626
SMa1272
SMa1273: SMa1273 - NorB nitric oxide reductase, large subunit, at 696,686 to 698,032
SMa1273
SMa1276: SMa1276 - NorC nitric oxide reductase, small subunit, at 698,057 to 698,509
SMa1276
SMa1279: SMa1279 - NorE accessory protein for nitric oxide reductase, at 698,968 to 699,534
SMa1279
SMa1283: SMa1283 - NnrU family protein, at 700,220 to 700,906
SMa1283
Group
Condition
SMa1272
SMa1273
SMa1276
SMa1279
SMa1283
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.3
-0.7
-0.3
-0.9
-0.4
stress
Sisomicin 0.004 mg/ml
-0.5
-0.1
-0.5
-0.2
-0.4
nitrogen source
NAG (N)
-0.3
-0.1
-0.4
-1.0
+0.0
stress
Paraquat dichloride 0.3 mg/ml
-0.4
-0.1
-0.7
-0.4
-0.1
nitrogen source
L-Histidine (N)
-0.4
-0.2
-0.1
-0.7
-0.3
nitrogen source
Uridine (N)
-0.6
-0.0
-0.4
-0.4
-0.1
stress
copper (II) chloride 1 mM
-0.1
-0.0
-0.7
-0.7
+0.0
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.2
-0.7
-0.6
-0.2
+0.1
stress
Thallium(I) acetate 0.001 mg/ml
-0.4
-0.3
-0.6
+0.2
-0.3
carbon source
Uridine (C)
+0.2
-0.1
-0.4
-0.8
-0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.6
+0.1
-0.5
-0.3
+0.1
nitrogen source
Cytosine (N)
-0.4
-0.0
-0.2
-0.7
+0.2
nitrogen source
L-Serine (N)
+0.2
-0.2
-0.1
-0.6
-0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-0.4
-0.1
-0.4
+0.2
-0.2
lb no stress control
LB no stress control
+0.2
-0.1
-0.4
+0.0
-0.5
lb
LB
-0.6
+0.0
-0.3
-0.2
+0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.3
-0.0
-0.1
-1.0
+0.2
nitrogen source
Gelatin (N)
-0.0
-0.2
-0.3
-0.4
+0.3
stress
Polymyxin B sulfate 0.00005 mg/ml
-0.2
-0.4
-0.7
+0.3
+0.5
pH
LB, pH8
-0.2
-0.1
-0.1
-0.4
+0.4
carbon source
L-Alanine (C)
-0.3
-0.0
+0.5
-0.6
+0.1
stress
D-Cycloserine 0.05 mg/ml
-0.3
-0.0
-0.4
-0.2
+0.6
carbon source
NAG (C)
-0.0
+0.1
-0.3
-0.4
+0.4
stress
perchlorate 10 mM
-0.2
+0.2
-0.5
-0.0
+0.4
carbon source
D-Glucose (C)
+0.0
+0.1
+0.5
-0.5
+0.2
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.0
+0.1
-0.4
+0.4
+0.3
carbon source
Protocatechuic Acid (C)
+0.2
-0.1
+0.5
-0.3
+0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.3
+0.2
+0.5
-0.2
+0.0
stress
Chlorite 0.1 mM
+0.5
+0.1
-0.5
+0.3
+0.6
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.3
+0.2
+0.0
+0.6
+0.1
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