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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa1262 and SMa1264 are separated by 376 nucleotides
SMa1264 and SMa1266 are separated by 447 nucleotides
SMa1266 and SMa1269 are separated by 79 nucleotides
SMa1269 and SMa1272 are separated by 4 nucleotides
SMa1262: SMa1262 - hypothetical protein, at 690,309 to 691,118
SMa1262
SMa1264: SMa1264 - hypothetical protein, at 691,495 to 692,028
SMa1264
SMa1266: SMa1266 - coproporphyrinogen III oxidase, at 692,476 to 693,828
SMa1266
SMa1269: SMa1269 - NorD accessory protein for nitric oxide reductase, at 693,908 to 695,803
SMa1269
SMa1272: SMa1272 - NorQ accessory protein for nitric oxide reductase, at 695,808 to 696,626
SMa1272
Group
Condition
SMa1262
SMa1264
SMa1266
SMa1269
SMa1272
stress
Polymyxin B sulfate 0.00005 mg/ml
-0.2
-1.0
-0.2
-0.2
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-0.1
-0.5
-0.4
-0.3
-0.4
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.1
-0.2
-0.5
-0.8
-0.3
stress
Cisplatin 0.0005 mg/ml
-0.4
-0.2
-0.2
-0.2
-0.3
stress
Sisomicin 0.004 mg/ml
-0.5
-0.1
-0.0
-0.2
-0.5
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.2
-0.1
+0.1
-0.2
-0.6
stress
3-octanone 0.456 mM
-0.0
-1.1
-0.0
+0.1
+0.1
stress
Cisplatin 0.001 mg/ml
-0.4
+0.1
-0.1
-0.2
-0.4
stress
copper (II) chloride 1 mM
+0.3
-0.5
-0.3
-0.3
-0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.2
-0.6
-0.0
-0.2
+0.1
stress
Paraquat dichloride 0.3 mg/ml
-0.2
-0.3
-0.1
+0.2
-0.4
lb no stress control
LB no stress control
+0.0
-0.5
+0.1
-0.2
-0.2
carbon source
methyl 3-keto-a-D-glucopyranoside (C)
-0.3
+0.2
+0.1
-0.2
-0.4
nutrient
Min media with glucose
+0.3
-0.3
-0.1
-0.2
-0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
+0.3
+0.1
-0.5
-0.1
lb
LB
-0.2
+0.3
-0.1
+0.2
-0.6
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.2
+0.2
-0.3
-0.3
-0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.3
+0.4
+0.0
-0.2
-0.3
pH
LB, pH6
+0.0
-0.5
+0.0
+0.4
-0.2
nitrogen source
Uridine (N)
+0.3
+0.3
-0.2
-0.1
-0.6
r2a control
R2A control for volatile experiments
+0.3
-0.4
+0.3
-0.1
-0.2
nitrogen source
NAG (N)
+0.4
+0.2
-0.1
-0.1
-0.3
stress
Thallium(I) acetate 0.001 mg/ml
-0.4
+0.6
-0.2
+0.4
-0.4
carbon source
Lactitol (C)
-0.2
+0.6
+0.2
+0.2
-0.5
nitrogen source
L-Leucine (N)
+0.1
+0.6
-0.3
+0.0
-0.1
carbon source
5-Aminovaleric (C)
+0.3
-0.4
-0.1
+0.3
+0.2
stress
Chlorite 0.1 mM
+0.4
-0.2
-0.0
-0.3
+0.5
carbon source
D-Mannose (C)
+0.5
-0.1
+0.1
+0.3
-0.2
nitrogen source
nitrate (N)
+0.4
+0.2
-0.1
-0.3
+0.3
nitrogen source
Gly-DL-Asp (N)
+0.3
+0.1
-0.2
+0.0
+0.5
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