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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa1261 and SMa1262 are separated by 356 nucleotides
SMa1262 and SMa1264 are separated by 376 nucleotides
SMa1264 and SMa1266 are separated by 447 nucleotides
SMa1266 and SMa1269 are separated by 79 nucleotides
SMa1261: SMa1261 - hypothetical protein, at 689,635 to 689,952
SMa1261
SMa1262: SMa1262 - hypothetical protein, at 690,309 to 691,118
SMa1262
SMa1264: SMa1264 - hypothetical protein, at 691,495 to 692,028
SMa1264
SMa1266: SMa1266 - coproporphyrinogen III oxidase, at 692,476 to 693,828
SMa1266
SMa1269: SMa1269 - NorD accessory protein for nitric oxide reductase, at 693,908 to 695,803
SMa1269
Group
Condition
SMa1261
SMa1262
SMa1264
SMa1266
SMa1269
stress
Polymyxin B sulfate 0.00005 mg/ml
-0.3
-0.2
-1.0
-0.2
-0.2
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.3
+0.1
-0.2
-0.5
-0.8
stress
Cisplatin 0.0005 mg/ml
-0.4
-0.4
-0.2
-0.2
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
+0.1
-0.1
-0.5
-0.4
-0.3
stress
3-octanone 0.456 mM
-0.0
-0.0
-1.1
-0.0
+0.1
stress
copper (II) chloride 1 mM
-0.0
+0.3
-0.5
-0.3
-0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.7
-0.3
+0.4
+0.0
-0.2
stress
Thallium(I) acetate 0.0025 mg/ml
-0.2
+0.2
-0.2
-0.4
-0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.3
-0.1
+0.3
+0.1
-0.5
stress
Nickel (II) chloride 1 mM
-0.7
+0.0
+0.3
-0.1
-0.0
r2a control
R2A control for volatile experiments
+0.4
-0.1
-0.5
+0.0
-0.1
stress
Chlorite 0.1 mM
-0.1
+0.4
-0.2
-0.0
-0.3
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.1
+0.2
+0.2
-0.3
-0.3
stress
Cisplatin 0.001 mg/ml
+0.4
-0.4
+0.1
-0.1
-0.2
pH
LB, pH6
-0.8
+0.2
+0.3
-0.1
+0.2
stress
Paraquat dichloride 0.3 mg/ml
+0.3
-0.2
-0.3
-0.1
+0.2
carbon source
L-Malic (C)
-0.5
+0.1
+0.2
-0.0
+0.2
nitrogen source
NAG (N)
-0.4
+0.4
+0.2
-0.1
-0.1
nutrient
Min media with glucose
+0.3
+0.3
-0.3
-0.1
-0.2
carbon source
L-Histidine (C)
-0.6
+0.3
+0.4
+0.0
+0.0
nitrogen source
L-Leucine (N)
-0.2
+0.1
+0.6
-0.3
+0.0
nitrogen source
nitrate (N)
-0.0
+0.4
+0.2
-0.1
-0.3
r2a control
R2A control for volatile experiments
+0.6
-0.4
-0.0
+0.1
+0.1
stress
Thallium(I) acetate 0.001 mg/ml
-0.0
-0.4
+0.6
-0.2
+0.4
carbon source
5-Aminovaleric (C)
+0.3
+0.3
-0.4
-0.1
+0.3
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.5
+0.2
-0.2
+0.1
-0.2
r2a control
R2A control for volatile experiments
+0.4
+0.3
-0.4
+0.3
-0.1
carbon source
Lactitol (C)
-0.1
-0.2
+0.6
+0.2
+0.2
carbon source
Protocatechuic Acid (C)
+0.6
+0.2
+0.1
+0.1
+0.1
carbon source
succinate (C)
+0.2
+0.3
+0.4
+0.0
+0.2
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