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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa1243 and SMa1245 are separated by 110 nucleotides
SMa1245 and SMa1247 are separated by 624 nucleotides
SMa1247 and SMa1250 are separated by 98 nucleotides
SMa1250 and SMa1252 are separated by 245 nucleotides
SMa1243: SMa1243 - Azu1 pseudoazurin, at 680,910 to 681,353
SMa1243
SMa1245: SMa1245 - Crp/fnr-like transcriptional regulator, at 681,464 to 682,111
SMa1245
SMa1247: SMa1247 - NirV protein, at 682,736 to 683,650
SMa1247
SMa1250: SMa1250 - NirK nitrite reductase, at 683,749 to 684,879
SMa1250
SMa1252: SMa1252 - NnrS family protein, at 685,125 to 686,336
SMa1252
Group
Condition
SMa1243
SMa1245
SMa1247
SMa1250
SMa1252
stress
Polymyxin B sulfate 0.00005 mg/ml
-2.0
-0.5
-0.3
-0.0
-0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-1.4
-1.0
-0.2
-0.0
+0.4
nitrogen source
L-Histidine (N)
-1.1
-0.5
-0.4
-0.1
-0.1
nitrogen source
NAG (N)
-0.8
-0.1
-0.6
-0.1
-0.5
stress
nitrate 40 mM
-1.1
-0.1
-0.3
-0.3
-0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-2.0
-0.7
+0.6
-0.1
+0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.8
-0.3
-0.5
+0.0
-0.2
nutrient
Min media with glucose
-0.7
-0.5
-0.0
-0.0
-0.3
stress
Paraquat dichloride 0.2 mg/ml
-0.6
-0.3
-0.2
-0.3
-0.1
nitrogen source
Gelatin (N)
-0.5
-0.4
-0.2
-0.1
-0.2
stress
Cisplatin 0.0005 mg/ml
-0.0
-0.8
-0.4
-0.2
+0.0
nitrogen source
L-Arginine (N)
-0.4
-0.7
-0.5
+0.3
+0.0
stress
Aluminum chloride
-0.5
-0.6
-0.4
-0.0
+0.2
stress
6-Pentyl-2H-pyran-2-one 0.385649 mM
+0.0
-0.7
-0.0
+0.2
-0.5
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-1.4
+0.9
-0.5
+0.2
-0.1
stress
copper (II) chloride 1 mM
+0.3
-0.2
-0.3
-0.2
-0.5
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-1.3
-0.2
+0.1
+0.4
+0.1
pH
LB, pH6
-0.6
-0.3
+0.2
+0.2
-0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.3
-0.7
-0.1
+0.4
+0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.6
-0.3
+0.0
-0.1
+0.5
stress
Thallium(I) acetate 0.0025 mg/ml
+0.6
-0.3
-0.1
-0.3
-0.3
stress
Cisplatin 0.001 mg/ml
+0.7
-0.1
-0.4
-0.2
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
+0.2
+0.5
-0.3
-0.2
-0.4
stress
Sisomicin 0.004 mg/ml
+0.4
+0.1
-0.1
-0.3
-0.4
dmso control
DMSO control
-0.3
+0.5
+0.1
+0.2
-0.5
carbon source
D-Mannitol (C)
+0.3
-0.5
+0.4
+0.2
-0.2
stress
Paraquat dichloride 0.2 mg/ml
-0.2
+1.2
+0.0
+0.0
+0.0
carbon source
acetate (C)
+0.5
+0.3
+0.3
+0.3
-0.2
stress
3-octanone 5.310333333 mM
+0.3
+0.6
+0.2
+0.2
-0.0
r2a control
R2A control for volatile experiments
+0.6
+0.3
+0.2
+0.3
-0.1
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