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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa1231 and SMa1232 are separated by 63 nucleotides
SMa1232 and SMa1233 are separated by 3 nucleotides
SMa1233 and SMa1236 overlap by 31 nucleotides
SMa1236 and SMa1239 overlap by 26 nucleotides
SMa1231: SMa1231 - hypothetical protein, at 675,132 to 675,956
SMa1231
SMa1232: SMa1232 - NapC membrane-bound tetraheme cytochrome c subunit, at 676,020 to 676,721
SMa1232
SMa1233: SMa1233 - NapB periplasmic nitrate reductase cytochrome c- type subunit, at 676,725 to 677,228
SMa1233
SMa1236: SMa1236 - nitrate reductase catalytic subunit, at 677,198 to 679,702
SMa1236
SMa1239: SMa1239 - NapD component of periplasmic nitrate reductase, at 679,677 to 679,964
SMa1239
Group
Condition
SMa1231
SMa1232
SMa1233
SMa1236
SMa1239
nitrogen source
L-Arginine (N)
+0.2
-0.6
-0.9
+0.1
-2.8
stress
6-Pentyl-2H-pyran-2-one 0.385649 mM
-0.1
-0.6
-0.2
-0.1
-1.4
stress
Polymyxin B sulfate 0.00005 mg/ml
-0.0
-0.5
-0.6
-0.0
-1.4
stress
Cisplatin 0.0005 mg/ml
-0.1
+0.1
-1.2
-0.0
-1.2
nitrogen source
L-Histidine (N)
-0.5
-0.4
-0.2
-0.5
-0.6
nitrogen source
Cytosine (N)
+0.1
+0.0
-1.0
+0.1
-1.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.3
-0.5
+0.1
+0.0
-1.5
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.2
+0.1
-1.0
+0.1
-0.6
dmso control
DMSO control
+0.1
-0.9
-0.2
-0.0
-0.4
stress
copper (II) chloride 1 mM
+0.0
+0.3
-0.4
-0.1
-1.1
stress
3-octanone 2.655166667 mM
-0.1
-0.3
+0.1
+0.1
-1.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
+0.0
-0.4
+0.4
+0.0
-1.2
stress
6-Pentyl-2H-pyran-2-one 0.4177863333 mM
+0.2
-0.7
-0.1
+0.0
-0.6
stress
3-octanone 5.310333333 mM
-0.0
-1.2
-0.3
+0.1
+0.5
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.2
-0.4
+0.1
+0.1
-0.9
stress
Cisplatin 0.001 mg/ml
+0.5
-0.3
-0.2
-0.0
-0.6
nitrogen source
NAG (N)
-0.3
-0.4
-0.5
+0.1
+0.5
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.2
-1.3
+0.1
+0.1
+0.4
carbon source
D-Mannose (C)
+0.2
+0.4
-0.0
+0.2
-0.7
carbon source
L-Lysine (C)
+0.3
+0.6
+0.0
+0.3
-0.9
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.0
-0.5
+0.3
-0.0
+0.6
carbon source
methyl-beta-D-xylopyranoside (C)
-0.1
-0.6
-0.1
+0.1
+1.2
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.2
+0.3
+0.6
+0.0
-0.5
carbon source
pipercolic (C)
+0.1
+0.5
+0.4
+0.2
-0.4
carbon source
succinate (C)
+0.2
+0.4
-0.3
+0.3
+0.4
carbon source
acetate (C)
+0.3
+0.7
-0.3
+0.1
+0.7
carbon source
D-Mannitol (C)
+0.1
+0.5
+0.2
+0.3
+0.5
carbon source
D-Xylose (C)
+0.4
+0.6
+0.1
+0.4
+0.2
carbon source
Fumarate (C)
+0.3
+0.8
+0.2
+0.2
+0.7
carbon source
Myristic (C)
+0.2
+0.8
+0.4
+0.3
+0.6
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