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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa1210 and SMa1211 overlap by 4 nucleotides
SMa1211 and SMa1213 are separated by 228 nucleotides
SMa1213 and SMa1214 are separated by 3 nucleotides
SMa1214 and SMa1216 are separated by 12 nucleotides
SMa1210: SMa1210 - nitrogen fixation protein FixH, at 665,057 to 665,560
SMa1210
SMa1211: SMa1211 - FixG iron sulfur membrane protein, at 665,557 to 667,131
SMa1211
SMa1213: SMa1213 - FixP1 di-heme cytochrome c, at 667,360 to 668,229
SMa1213
SMa1214: SMa1214 - FixQ1 nitrogen fixation protein, at 668,233 to 668,385
SMa1214
SMa1216: SMa1216 - cbb3-type cytochrome c oxidase subunit II, at 668,398 to 669,129
SMa1216
Group
Condition
SMa1210
SMa1211
SMa1213
SMa1214
SMa1216
stress
copper (II) chloride 1 mM
-1.1
-0.0
-0.0
N.D.
-0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
-0.2
-0.5
N.D.
-0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.8
-0.0
-0.1
N.D.
-0.3
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.7
-0.7
+0.2
N.D.
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-0.3
-0.4
+0.0
N.D.
-0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.8
-0.0
+0.3
N.D.
-0.2
stress
perchlorate 10 mM
-0.5
-0.1
-0.3
N.D.
+0.3
stress
3-octanone 0.456 mM
-0.6
+0.2
-0.3
N.D.
+0.2
stress
Chlorite 0.1 mM
-0.5
-0.1
-0.3
N.D.
+0.4
tsb
Day4 LB
+0.4
+0.2
-0.5
N.D.
-0.6
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.7
+0.3
-0.0
N.D.
+0.1
pH
LB, pH8
+0.6
-0.1
-0.3
N.D.
-0.1
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-0.3
+0.3
+0.3
N.D.
-0.2
pH
LB, pH6
+0.9
+0.2
-0.8
N.D.
+0.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.7
-0.3
+0.2
N.D.
+0.0
nitrogen source
Cytosine (N)
-0.3
+0.2
+0.7
N.D.
+0.2
tsb
Day4 TSB
-0.2
+0.2
+0.4
N.D.
+0.5
carbon source
pipercolic (C)
+0.5
+0.2
+0.1
N.D.
+0.2
carbon source
Fumarate (C)
+0.4
+0.1
+0.3
N.D.
+0.3
lb
LB
+0.4
+0.2
+0.1
N.D.
+0.3
carbon source
L-Glutamine (C)
+0.5
+0.1
+0.6
N.D.
-0.0
nitrogen source
L-Asparagine (N)
+0.7
+0.1
+0.3
N.D.
+0.0
nutrient
L-Histidine
+0.5
+0.1
+0.4
N.D.
+0.2
carbon source
D-Glucosamine Hydrochloride (C)
+0.4
+0.1
+0.4
N.D.
+0.2
carbon source
succinate (C)
+0.7
+0.1
+0.0
N.D.
+0.3
carbon source
D-Ribose (C)
+0.4
+0.1
+0.3
N.D.
+0.4
nitrogen source
Gly-DL-Asp (N)
+0.1
+0.2
+0.8
N.D.
+0.3
carbon source
Myristic (C)
+0.3
+0.2
+0.6
N.D.
+0.3
nutrient
L-Lysine
+0.5
+0.2
+0.4
N.D.
+0.2
nutrient
L-Lysine
+0.8
+0.1
+0.2
N.D.
+0.3
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