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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa1198 and SMa1200 are separated by 64 nucleotides
SMa1200 and SMa1201 are separated by 218 nucleotides
SMa1201 and SMa1207 are separated by 236 nucleotides
SMa1207 and SMa1208 are separated by 73 nucleotides
SMa1198: SMa1198 - copper export protein, at 658,828 to 660,453
SMa1198
SMa1200: SMa1200 - hypothetical protein, at 660,518 to 661,033
SMa1200
SMa1201: SMa1201 - hypothetical protein, at 661,252 to 661,632
SMa1201
SMa1207: SMa1207 - Crp family transcriptional regulator, at 661,869 to 662,549
SMa1207
SMa1208: SMa1208 - FixS1 nitrogen fixation protein, at 662,623 to 662,790
SMa1208
Group
Condition
SMa1198
SMa1200
SMa1201
SMa1207
SMa1208
nitrogen source
L-Arginine (N)
-0.8
-1.1
-0.4
+0.0
N.D.
nitrogen source
L-Histidine (N)
-0.4
-0.4
-0.7
-0.4
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.3
-1.1
-0.3
-0.9
N.D.
carbon source
L-Histidine (C)
-0.2
-0.1
-1.2
-0.1
N.D.
carbon source
palatinose (C)
-0.3
+0.1
-0.7
-0.6
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.2
-0.1
-1.1
-0.4
N.D.
carbon source
L-Fucose (C)
+0.1
-0.1
-0.9
-0.5
N.D.
stress
3-octanone 5.310333333 mM
-0.3
-0.7
-0.5
+0.2
N.D.
nitrogen source
L-Asparagine (N)
+0.1
-0.6
-0.8
+0.1
N.D.
stress
Chlorite 0.1 mM
+0.4
-1.0
-0.3
-0.3
N.D.
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.2
-0.1
-0.9
-0.4
N.D.
stress
Paraquat dichloride 0.3 mg/ml
-0.2
+0.3
-0.9
-0.5
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.1
+0.5
-1.2
-0.5
N.D.
carbon source
Mannobiose (C)
+0.4
-0.3
-1.1
-0.1
N.D.
stress
Paraquat dichloride 0.2 mg/ml
-0.3
+0.2
-0.9
-0.1
N.D.
carbon source
Beta-Lactose (C)
+0.3
-0.2
-0.9
-0.2
N.D.
nitrogen source
Cytosine (N)
-0.1
+0.0
-1.3
+0.5
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.2
-0.2
+0.5
-1.0
N.D.
carbon source
pyruvate (C)
-0.1
+0.5
-0.9
+0.1
N.D.
nitrogen source
L-Glutamine (N)
-0.4
-0.6
+0.4
+0.2
N.D.
carbon source
acetate (C)
+0.1
+0.5
-0.9
+0.2
N.D.
carbon source
L-Arabinose (C)
+0.5
+0.2
-0.8
+0.0
N.D.
temperature
LB, 23C
+0.1
+0.6
-0.7
+0.0
N.D.
r2a control
R2A control for volatile experiments
+0.9
-0.5
-0.3
+0.1
N.D.
pH
LB, pH6
+0.4
+0.2
+0.8
-0.7
N.D.
carbon source
D-Mannose (C)
+0.5
+0.6
-0.4
+0.2
N.D.
carbon source
D-Xylose (C)
+0.1
+0.4
+0.6
+0.5
N.D.
carbon source
D-Glucose (C)
+0.4
+0.5
+0.7
+0.1
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.3
+0.2
+0.7
+0.5
N.D.
carbon source
L-Lysine (C)
+0.4
+0.5
+0.6
+0.5
N.D.
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