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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa1120 and SMa1122 are separated by 6 nucleotides
SMa1122 and SMa1124 are separated by 3 nucleotides
SMa1124 and SMa1126 are separated by 19 nucleotides
SMa1126 and SMa1128 are separated by 53 nucleotides
SMa1120: SMa1120 - ABC transporter ATP-binding protein, at 609,267 to 610,181
SMa1120
SMa1122: SMa1122 - permease, at 610,188 to 612,551
SMa1122
SMa1124: SMa1124 - hypothetical protein, at 612,555 to 613,754
SMa1124
SMa1126: SMa1126 - Protease, at 613,774 to 614,892
SMa1126
SMa1128: SMa1128 - DegP4 protease like protein, at 614,946 to 616,274
SMa1128
Group
Condition
SMa1120
SMa1122
SMa1124
SMa1126
SMa1128
stress
Polymyxin B sulfate 0.00005 mg/ml
-0.0
-0.4
-1.4
+0.1
-0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.5
+0.2
-1.7
+0.1
-0.2
stress
1-octen-3-ol 0.6030326667 mM
-0.8
+0.0
-0.5
-0.4
+0.0
stress
copper (II) chloride 1 mM
-0.5
-0.3
-0.8
-0.0
+0.1
stress
3-octanone 5.310333333 mM
-0.7
-0.2
-0.1
-0.2
-0.2
lb no stress control
LB no stress control
-0.6
+0.0
+0.1
-0.5
-0.4
stress
6-Pentyl-2H-pyran-2-one 0.4177863333 mM
-0.4
-0.1
-0.5
-0.3
+0.1
r2a control
R2A control for volatile experiments
-0.4
+0.2
+0.2
-0.5
-0.3
carbon source
D-Glucose (C)
-0.5
-0.1
-0.6
+0.2
+0.1
nitrogen source
NAG (N)
-0.5
+0.1
-0.6
+0.2
+0.1
r2a control
R2A control for volatile experiments
-0.6
+0.1
+0.2
-0.3
+0.1
stress
3-octanone 2.655166667 mM
+0.5
-0.3
-0.3
-0.2
-0.1
pH
LB, pH6
-0.4
-0.3
+0.4
-0.2
+0.2
carbon source
D-Sorbitol (C)
-0.2
-0.3
+0.2
+0.4
-0.2
nitrogen source
Gly-DL-Asp (N)
+0.1
+0.0
-0.7
+0.2
+0.5
pH
LB, pH8
-0.4
-0.2
+0.8
+0.1
-0.2
nitrogen source
D-Glucosamine Hydrochloride (N)
+0.2
+0.1
-0.6
+0.2
+0.3
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.4
+0.1
+0.7
-0.1
-0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
-0.1
+1.0
-0.2
-0.3
stress
Thallium(I) acetate 0.0025 mg/ml
+0.3
-0.2
+0.8
-0.4
-0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.8
-0.1
+0.2
-0.2
-0.1
nitrogen source
Cytosine (N)
-0.5
-0.0
+0.9
+0.1
+0.3
stress
Nickel (II) chloride 1 mM
+0.7
-0.1
+0.3
-0.1
+0.2
stress
Paraquat dichloride 0.2 mg/ml
+0.4
-0.2
+0.9
+0.1
+0.1
carbon source
D-Mannose (C)
+0.0
-0.0
+0.6
+0.5
+0.2
temperature
LB, 23C
+0.5
-0.1
+0.6
+0.4
+0.0
carbon source
L-Lysine (C)
+0.5
+0.3
+0.3
+0.4
+0.0
carbon source
D-Mannose (C)
+0.2
+0.1
+0.6
+0.4
+0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.2
-0.3
+1.2
+0.4
+0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.5
+0.3
+0.7
+0.1
+0.3
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