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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa1095 and SMa1096 are separated by 42 nucleotides
SMa1096 and SMa1097 overlap by 88 nucleotides
SMa1097 and SMa1099 are separated by 167 nucleotides
SMa1099 and SMa1100 are separated by 370 nucleotides
SMa1095: SMa1095 - hypothetical protein, at 598,804 to 599,112
SMa1095
SMa1096: SMa1096 - hypothetical protein, at 599,155 to 599,616
SMa1096
SMa1097: SMa1097 - hypothetical protein, at 599,529 to 600,044
SMa1097
SMa1099: SMa1099 - CycB1 cytochrome c-552 precursor, at 600,212 to 600,526
SMa1099
SMa1100: SMa1100 - hypothetical protein, at 600,897 to 601,418
SMa1100
Group
Condition
SMa1095
SMa1096
SMa1097
SMa1099
SMa1100
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-4.0
+0.2
-0.9
+0.1
-0.3
stress
Paraquat dichloride 0.2 mg/ml
-3.7
+0.2
-0.1
+0.0
-0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-4.1
+0.2
-0.1
-0.1
+0.2
stress
Chlorite 0.1 mM
-4.8
+0.1
+0.3
+0.5
-0.0
lb no stress control
LB no stress control
-1.2
-0.3
-0.3
-2.2
+0.4
stress
1-octen-3-ol 0.4933903333 mM
-1.8
-0.0
-0.2
-0.8
-0.6
stress
1-octen-3-ol 0.5427293333 mM
-1.0
-0.2
+0.1
-1.0
-0.9
stress
6-Pentyl-2H-pyran-2-one 0.4557668333 mM
-1.9
+0.2
-0.1
-0.7
-0.5
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-4.0
-0.1
+0.3
+0.6
+0.4
r2a control
R2A control for volatile experiments
-1.9
+0.1
-0.3
-0.5
-0.0
stress
6-Pentyl-2H-pyran-2-one 0.4177863333 mM
-1.4
-0.0
-0.0
-1.0
-0.2
nutrient
L-Lysine
-1.6
-0.1
+0.0
-0.6
-0.3
r2a control
R2A control for volatile experiments
+0.2
-0.2
-0.4
-1.1
-0.6
stress
Paraquat dichloride 0.05 mg/ml
-2.1
+0.1
-0.2
-0.1
+0.2
carbon source
L-Arabinose (C)
-1.6
+0.1
+0.3
-0.6
-0.1
stress
3-octanone 2.655166667 mM
+0.1
+0.2
-0.3
-1.7
-0.1
pH
LB, pH6
-1.6
-0.1
+0.1
+0.4
-0.3
nitrogen source
Cytosine (N)
+0.6
+0.1
-0.3
-0.8
-0.7
carbon source
D-Xylose (C)
-1.5
+0.3
+0.5
-0.5
+0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-1.2
-0.1
-0.5
+0.9
-0.1
stress
Nickel (II) chloride 1 mM
+0.9
-0.4
-0.1
-1.7
+0.4
stress
3-octanone 2.655166667 mM
+0.9
-0.1
-0.3
-0.9
-0.4
r2a control
R2A control for volatile experiments
+1.1
-0.2
-0.2
-0.7
-0.6
dmso control
DMSO control
+0.5
+0.4
+0.1
-1.1
-0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-2.1
+0.1
+0.7
+0.3
+0.5
stress
1-octen-3-ol 0.5427293333 mM
+0.9
-0.0
+0.1
-1.1
-0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.7
-0.2
+0.2
-1.4
+0.9
carbon source
Protocatechuic Acid (C)
-0.7
+0.6
+0.6
-0.5
+0.4
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
+1.8
-0.1
+0.0
-0.0
-0.5
stress
Polymyxin B sulfate 0.00005 mg/ml
+1.0
+0.1
+0.3
+0.9
+0.2
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