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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa1076 and SMa1077 are separated by 161 nucleotides
SMa1077 and SMa1078 are separated by 29 nucleotides
SMa1078 and SMa1079 are separated by 5 nucleotides
SMa1079 and SMa1081 are separated by 21 nucleotides
SMa1076: SMa1076 - hypothetical protein, at 587,855 to 588,439
SMa1076
SMa1077: SMa1077 - Nex18 symbiotically induced protein, at 588,601 to 589,083
SMa1077
SMa1078: SMa1078 - hypothetical protein, at 589,113 to 589,337
SMa1078
SMa1079: SMa1079 - TspO/MBR family protein, at 589,343 to 589,885
SMa1079
SMa1081: SMa1081 - hypothetical protein, at 589,907 to 590,068
SMa1081
Group
Condition
SMa1076
SMa1077
SMa1078
SMa1079
SMa1081
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.0
-1.0
-0.3
-0.1
-0.1
nitrogen source
NAG (N)
-0.5
-0.8
-0.4
-0.0
+0.3
lb no stress control
LB no stress control
-0.4
-0.4
+0.1
-0.3
-0.3
nitrogen source
Cytosine (N)
-0.2
-0.6
-0.3
+0.0
-0.1
nitrogen source
Uridine (N)
-0.3
+0.2
-0.4
-0.7
+0.1
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.2
-0.6
+0.1
-0.4
-0.4
nitrogen source
D-Glucosamine Hydrochloride (N)
-0.4
+0.1
-0.5
-0.5
+0.3
nitrogen source
L-Histidine (N)
-0.6
-0.2
-0.6
-0.0
+0.4
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.4
+0.1
-0.3
+0.0
-0.3
stress
6-Pentyl-2H-pyran-2-one 0.4177863333 mM
-0.3
-0.5
+0.1
+0.0
-0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.4
+0.3
+0.2
-0.2
-0.7
stress
Cisplatin 0.0005 mg/ml
-0.1
+0.3
-0.3
+0.0
-0.6
carbon source
Lactulose (C)
-0.1
+0.2
-0.5
+0.2
-0.3
nutrient
L-Histidine
+0.2
-1.1
+0.0
+0.1
+0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.4
-0.5
+0.2
-0.2
-0.4
nutrient
L-Lysine
+0.2
-0.7
-0.1
+0.0
+0.1
nitrogen source
L-Arginine (N)
-0.0
+0.7
-1.0
-0.4
+0.3
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.1
-0.2
+0.4
-0.3
-0.2
stress
1-octen-3-ol 0.4933903333 mM
-0.1
-0.2
+0.6
-0.2
-0.4
stress
copper (II) chloride 1 mM
+0.0
+0.3
+0.3
-0.8
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.4
-0.2
+0.1
+0.0
+0.6
stress
Paraquat dichloride 0.2 mg/ml
-0.2
+0.7
-0.4
+0.1
-0.0
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.7
+0.5
-0.6
+0.1
-0.5
r2a control
R2A control for volatile experiments
-0.3
+0.4
+0.4
-0.0
-0.1
stress
Chlorite 0.1 mM
+0.1
+0.4
-0.5
+0.0
+0.4
lb
LB
+0.2
+0.3
+0.2
+0.2
-0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.4
+0.4
+0.2
+0.0
-0.3
carbon source
L-Lysine (C)
+0.4
+0.8
-0.3
+0.2
-0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.3
+0.5
-1.1
+0.4
+0.7
carbon source
palatinose (C)
+0.3
+0.1
+0.7
+0.1
-0.1
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