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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa0917 and SMa5006 are separated by 566 nucleotides
SMa5006 and SMa0922 are separated by 619 nucleotides
SMa0922 and SMa0929 are separated by 1007 nucleotides
SMa0929 and SMa0930 overlap by 10 nucleotides
SMa0917: SMa0917 - hypothetical protein, at 509,885 to 510,211
SMa0917
SMa5006: SMa5006 - hypothetical protein, at 510,778 to 511,137
SMa5006
SMa0922: SMa0922 - hypothetical protein, at 511,757 to 512,080
SMa0922
SMa0929: SMa0929 - conjugal transfer protein TraG, at 513,088 to 515,007
SMa0929
SMa0930: SMa0930 - TraD conjugal transfer protein, at 514,998 to 515,237
SMa0930
Group
Condition
SMa0917
SMa5006
SMa0922
SMa0929
SMa0930
nitrogen source
L-Asparagine (N)
-0.9
+0.1
-0.8
+0.0
N.D.
pH
LB, pH6
-0.3
-0.0
-0.8
-0.2
N.D.
lb
LB
-0.1
-0.2
-0.5
-0.3
N.D.
stress
Cisplatin 0.0005 mg/ml
-0.1
+0.2
-1.0
-0.2
N.D.
lb
LB
-0.3
-0.1
-0.4
-0.2
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.5
-0.1
-0.1
-0.3
N.D.
pH
LB, pH8
-0.4
+0.1
-0.4
-0.1
N.D.
carbon source
Beta-Lactose (C)
-0.3
-0.0
-0.5
+0.1
N.D.
stress
Thallium(I) acetate 0.0025 mg/ml
+0.0
+0.1
-0.5
-0.3
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.1
+0.1
-1.0
+0.0
N.D.
nitrogen source
L-Leucine (N)
+0.3
+0.0
-0.9
+0.1
N.D.
r2a control
R2A control for volatile experiments
-0.5
+0.1
+0.3
-0.0
N.D.
nitrogen source
Uridine (N)
+0.5
-0.1
-0.5
-0.1
N.D.
nitrogen source
D-Glucosamine Hydrochloride (N)
+0.2
-0.1
-0.5
+0.2
N.D.
r2a control
R2A control for volatile experiments
-0.2
-0.1
+0.6
-0.3
N.D.
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.1
+0.3
-0.4
+0.2
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-0.2
-0.2
+0.5
-0.0
N.D.
nitrogen source
L-Arginine (N)
+0.1
+0.0
+0.5
-0.4
N.D.
nitrogen source
nitrate (N)
+0.4
-0.3
-0.1
+0.2
N.D.
nitrogen source
Cytosine (N)
+0.3
+0.2
-0.3
+0.3
N.D.
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.1
-0.2
+0.6
+0.3
N.D.
carbon source
Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
-0.2
+0.1
+0.6
+0.2
N.D.
carbon source
m-Inositol (C)
+0.2
+0.1
+0.5
-0.2
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.5
-0.2
-0.0
+0.3
N.D.
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.1
+0.2
+0.4
+0.2
N.D.
carbon source
L-Fucose (C)
+0.3
+0.2
+0.4
-0.0
N.D.
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.2
+0.0
+0.4
+0.3
N.D.
dmso control
DMSO control
+0.2
+0.2
+0.5
+0.2
N.D.
nitrogen source
L-Glutamine (N)
+0.0
+0.5
+0.6
-0.0
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.1
+0.3
+0.5
+0.2
N.D.
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