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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa0890 and SMa0892 overlap by 1 nucleotides
SMa0892 and SMa0894 are separated by 116 nucleotides
SMa0894 and SMa0896 are separated by 166 nucleotides
SMa0896 and SMa0900 are separated by 590 nucleotides
SMa0890: SMa0890 - hypothetical protein, at 495,968 to 497,392
SMa0890
SMa0892: SMa0892 - DnaE3 DNA polymerase III alpha chain, at 497,392 to 500,655
SMa0892
SMa0894: SMa0894 - hypothetical protein, at 500,772 to 501,068
SMa0894
SMa0896: SMa0896 - hypothetical protein, at 501,235 to 501,954
SMa0896
SMa0900: SMa0900 - anti-restriction protein, at 502,545 to 503,021
SMa0900
Group
Condition
SMa0890
SMa0892
SMa0894
SMa0896
SMa0900
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-0.4
-0.1
-0.2
-0.4
-1.0
nitrogen source
L-Histidine (N)
-0.5
-0.1
-0.5
-0.3
-0.5
nitrogen source
L-Leucine (N)
-0.4
-0.1
-0.5
-0.2
-0.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.4
+0.1
-0.9
+0.2
-0.2
nitrogen source
Uridine (N)
-0.2
-0.1
-0.2
-0.4
-0.3
nitrogen source
L-Asparagine (N)
-0.4
-0.1
-1.1
+0.6
-0.1
stress
Chlorite 0.1 mM
+0.0
-0.2
-0.3
-0.3
-0.2
stress
copper (II) chloride 1 mM
-0.1
-0.2
-0.5
+0.0
-0.2
stress
Paraquat dichloride 0.05 mg/ml
+0.2
-0.1
-0.4
-0.2
-0.4
stress
Paraquat dichloride 0.2 mg/ml
-0.4
-0.2
-0.3
+0.0
-0.0
stress
Nickel (II) chloride 1 mM
-0.4
-0.2
-0.6
+0.3
+0.1
pH
LB, pH6
-0.2
-0.1
-0.8
+0.2
+0.1
carbon source
acetate (C)
+0.1
+0.1
-0.6
-0.2
-0.1
nitrogen source
L-Serine (N)
-0.3
-0.0
-0.2
+0.2
-0.5
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.4
+0.0
-0.3
+0.3
-0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.3
-0.0
-0.6
+0.1
+0.1
nutrient
Min media with glucose
-0.1
-0.2
+0.3
-0.1
-0.4
nitrogen source
Gly-DL-Asp (N)
-0.3
-0.1
-0.2
+0.3
-0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
-0.1
-0.6
+0.4
-0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.3
-0.0
-0.9
+0.4
+0.3
dmso control
DMSO control
+0.1
+0.0
-0.7
+0.2
+0.2
stress
3-octanone 2.655166667 mM
+0.3
+0.1
-0.6
+0.2
-0.2
stress
Cisplatin 0.001 mg/ml
-0.2
-0.1
+0.5
-0.3
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.5
+0.3
-0.5
+0.8
+0.1
stress
6-Pentyl-2H-pyran-2-one 0.4177863333 mM
+0.3
-0.0
-0.4
-0.0
+0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.4
+0.1
-0.0
+0.5
+0.0
stress
6-Pentyl-2H-pyran-2-one 0.385649 mM
+0.2
+0.0
-0.6
+0.3
+0.3
lb no stress control
LB no stress control
+0.1
+0.2
-0.2
-0.1
+0.4
stress
3-octanone 2.655166667 mM
+0.3
+0.1
-0.3
+0.3
+0.2
nitrogen source
L-Arginine (N)
+0.0
-0.1
+0.4
+0.4
+0.3
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