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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa0868 and SMa0869 overlap by 4 nucleotides
SMa0869 and SMa0870 are separated by 265 nucleotides
SMa0870 and SMa0872 are separated by 687 nucleotides
SMa0872 and SMa0873 overlap by 1 nucleotides
SMa0868: SMa0868 - NodB chitooligosaccharide deacetylase, at 480,304 to 480,957
SMa0868
SMa0869: SMa0869 - acyltransferase, at 480,954 to 481,544
SMa0869
SMa0870: SMa0870 - NodD1 nod-box dependent transcriptional activator, at 481,810 to 482,736
SMa0870
SMa0872: SMa0872 - hypothetical protein, at 483,424 to 483,756
SMa0872
SMa0873: SMa0873 - nitrogenase molybdenum-cofactor biosynthesis protein NifN, at 483,756 to 485,081
SMa0873
Group
Condition
SMa0868
SMa0869
SMa0870
SMa0872
SMa0873
stress
Cisplatin 0.001 mg/ml
-0.6
-0.9
-0.1
-1.2
-0.2
nitrogen source
L-Arginine (N)
-0.0
+0.0
-1.2
-0.2
-0.2
stress
1-octen-3-ol 0.4933903333 mM
-0.5
-0.2
-0.3
-0.4
+0.1
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.0
-0.5
-0.5
-0.5
+0.1
stress
3-octanone 2.655166667 mM
-0.1
-0.6
-0.4
-0.3
+0.1
stress
Sisomicin 0.004 mg/ml
+0.0
+0.3
-0.3
-1.0
-0.2
lb
LB
-0.2
-0.4
+0.2
-0.5
-0.2
stress
nitrate 40 mM
-0.5
-0.3
+0.3
-0.4
-0.2
nitrogen source
Uridine (N)
-0.8
-0.0
-0.3
-0.0
+0.3
stress
Thallium(I) acetate 0.001 mg/ml
-0.0
-0.0
+0.4
-1.2
-0.1
r2a control
R2A control for volatile experiments
-0.2
-0.8
+0.1
+0.3
-0.2
stress
6-Pentyl-2H-pyran-2-one 0.4557668333 mM
-0.4
-0.1
-0.7
+0.3
+0.2
stress
Cisplatin 0.0005 mg/ml
-0.0
+0.2
+0.3
-0.8
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.1
+0.6
-0.3
-0.7
-0.3
nitrogen source
L-Asparagine (N)
+0.3
+0.3
-0.9
-0.4
+0.3
nitrogen source
L-Leucine (N)
-0.2
-0.7
+0.2
+0.4
-0.1
nitrogen source
L-Glutamine (N)
+0.2
-0.4
-0.5
+0.3
+0.2
stress
D-Cycloserine 0.05 mg/ml
-0.2
-0.0
+0.6
-0.6
-0.0
stress
Polymyxin B sulfate 0.00005 mg/ml
-0.4
+0.1
+0.8
-0.6
-0.1
pH
LB, pH6
+0.4
-0.5
+0.6
-0.5
-0.0
stress
copper (II) chloride 1 mM
-0.3
+0.2
+0.5
-0.3
-0.2
stress
Aluminum chloride
+0.3
-0.2
+0.6
-0.7
-0.0
nitrogen source
Cytosine (N)
+0.2
-0.0
-0.7
+0.5
+0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.2
+0.6
+0.4
-0.4
+0.0
stress
perchlorate 10 mM
-0.1
-0.0
+1.4
-0.7
+0.3
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.2
+0.4
+0.4
-0.4
+0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.4
+0.8
-0.4
+0.6
+0.3
lb
LB
+0.1
-0.2
+0.7
+0.4
+0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.4
+0.5
+0.2
+0.2
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.2
+1.0
-0.5
+0.6
+0.5
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