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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa5029 and SMa0846 are separated by 20 nucleotides
SMa0846 and SMa0848 are separated by 323 nucleotides
SMa0848 and SMa0849 are separated by 57 nucleotides
SMa0849 and SMa0850 are separated by 301 nucleotides
SMa5029: SMa5029 - transposase, fragment, at 465,166 to 465,342
SMa5029
SMa0846: SMa0846 - transposase, fragment, at 465,363 to 465,620
SMa0846
SMa0848: SMa0848 - hypothetical protein, at 465,944 to 466,360
SMa0848
SMa0849: SMa0849 - SyrM transcriptional regulator, at 466,418 to 467,398
SMa0849
SMa0850: SMa0850 - hypothetical protein, at 467,700 to 468,065
SMa0850
Group
Condition
SMa5029
SMa0846
SMa0848
SMa0849
SMa0850
agar plate interaction control
Parafilmed volatile agar plate with no fungus
N.D.
-4.9
-1.0
-0.1
-0.2
stress
6-Pentyl-2H-pyran-2-one 0.4557668333 mM
N.D.
-3.1
-0.7
+0.1
-0.7
stress
3-octanone 0.456 mM
N.D.
-3.0
-0.1
-0.6
-0.7
stress
3-octanone 2.655166667 mM
N.D.
-2.9
-0.9
-0.1
-0.1
stress
1-octen-3-ol 0.5427293333 mM
N.D.
-3.1
-0.5
+0.1
-0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
N.D.
-2.2
-0.8
-0.4
-0.2
stress
Cisplatin 0.001 mg/ml
N.D.
-0.9
-2.3
-0.5
+0.3
stress
1-octen-3-ol 0.4933903333 mM
N.D.
-3.0
+0.0
-0.0
-0.4
stress
1-octen-3-ol 0.5427293333 mM
N.D.
-3.0
-0.3
+0.1
-0.2
stress
1-octen-3-ol 0.6030326667 mM
N.D.
-3.1
-0.1
-0.2
+0.1
dmso control
DMSO control
N.D.
-2.9
-0.3
-0.1
-0.0
stress
6-Pentyl-2H-pyran-2-one 0.385649 mM
N.D.
-2.9
+0.3
-0.0
-0.5
stress
3-octanone 5.310333333 mM
N.D.
-3.1
+0.1
-0.2
+0.0
stress
1-octen-3-ol 0.6030326667 mM
N.D.
-3.0
-0.1
-0.1
+0.1
lb no stress control
LB no stress control
N.D.
-3.0
+0.2
-0.0
-0.2
dmso control
DMSO control
N.D.
-3.0
+0.2
-0.1
-0.0
stress
6-Pentyl-2H-pyran-2-one 0.385649 mM
N.D.
-2.9
-0.1
-0.0
+0.1
stress
6-Pentyl-2H-pyran-2-one 0.4557668333 mM
N.D.
-3.0
+0.4
+0.1
-0.3
stress
6-Pentyl-2H-pyran-2-one 0.4177863333 mM
N.D.
-3.0
-0.1
+0.1
+0.2
stress
nitrate 40 mM
N.D.
-1.8
-0.8
-0.0
-0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
N.D.
-1.4
-0.8
-0.1
-0.5
stress
copper (II) chloride 1 mM
N.D.
-1.5
-0.9
+0.1
-0.4
stress
6-Pentyl-2H-pyran-2-one 0.385649 mM
N.D.
-1.5
-0.6
-0.1
-0.4
carbon source
D-Ribose (C)
N.D.
-1.7
-0.3
-0.3
-0.0
stress
1-octen-3-ol 0.4933903333 mM
N.D.
-1.5
-0.0
-0.2
-0.6
carbon source
Lactitol (C)
N.D.
-1.3
-0.5
-0.0
-0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
N.D.
-1.1
-1.6
+0.1
+0.3
temperature
LB, 23C
N.D.
+0.5
-1.6
+0.0
+0.3
nitrogen source
L-Histidine (N)
N.D.
-1.1
+0.6
+0.6
-0.7
nitrogen source
NAG (N)
N.D.
+1.3
+1.3
+0.0
-0.2
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