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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa0825 and SMa0827 are separated by 99 nucleotides
SMa0827 and SMa0829 are separated by 90 nucleotides
SMa0829 and SMa0830 are separated by 53 nucleotides
SMa0830 and SMa0831 are separated by 495 nucleotides
SMa0825: SMa0825 - nitrogenase reductase, at 453,556 to 454,449
SMa0825
SMa0827: SMa0827 - NifD nitrogenase molybdenum-iron protein alpha chain, at 454,549 to 456,051
SMa0827
SMa0829: SMa0829 - NifK nitrogenase molybdenum-iron protein beta chain, at 456,142 to 457,683
SMa0829
SMa0830: SMa0830 - nitrogenase molybdenum-cofactor biosynthesis protein NifE, at 457,737 to 459,167
SMa0830
SMa0831: SMa0831 - NifX iron-molybdenum cluster-binding protein, at 459,663 to 460,163
SMa0831
Group
Condition
SMa0825
SMa0827
SMa0829
SMa0830
SMa0831
stress
3-octanone 0.456 mM
-0.3
-0.0
-0.2
-0.4
-1.0
stress
6-Pentyl-2H-pyran-2-one 0.385649 mM
-0.0
-0.3
-0.4
-0.1
-1.0
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.3
-0.1
-0.2
-0.3
-0.7
r2a control
R2A control for volatile experiments
-0.2
-0.3
-0.2
-0.4
-0.6
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.3
-0.2
-0.2
+0.1
-1.2
stress
6-Pentyl-2H-pyran-2-one 0.4177863333 mM
+0.1
-0.2
-0.2
-0.3
-0.9
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.0
-0.3
+0.1
-0.6
-0.8
stress
6-Pentyl-2H-pyran-2-one 0.4177863333 mM
-0.1
+0.0
-0.3
-0.2
-0.8
r2a control
R2A control for volatile experiments
-0.0
-0.2
-0.2
-0.5
-0.5
r2a control
R2A control for volatile experiments
+0.2
-0.4
-0.3
-0.3
-0.6
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.2
-0.0
-0.1
-0.6
-0.4
stress
3-octanone 0.456 mM
+0.1
-0.1
-0.4
-0.2
-0.6
stress
1-octen-3-ol 0.6030326667 mM
-0.3
-0.0
-0.2
+0.2
-0.8
stress
3-octanone 5.310333333 mM
+0.3
-0.0
-0.3
-0.2
-0.8
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.2
-0.1
-0.1
-0.3
-0.6
nitrogen source
Cytosine (N)
+0.5
+0.1
+0.0
-0.3
-1.1
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.1
-0.1
-0.0
-1.0
+0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-0.5
+0.1
+0.1
+0.2
-0.6
stress
6-Pentyl-2H-pyran-2-one 0.4557668333 mM
+0.3
-0.1
-0.3
-0.2
-0.3
r2a control
R2A control for volatile experiments
+0.2
-0.2
-0.2
-0.6
+0.3
stress
3-octanone 5.310333333 mM
+0.5
-0.2
-0.2
-0.3
-0.1
stress
3-octanone 5.310333333 mM
+0.4
-0.1
-0.2
-0.4
+0.2
stress
1-octen-3-ol 0.4933903333 mM
+0.4
-0.1
-0.2
+0.3
-0.6
carbon source
Mannobiose (C)
-0.1
+0.1
+0.2
+0.4
-0.6
stress
perchlorate 10 mM
+0.7
+0.3
+0.0
-0.3
-0.5
nitrogen source
L-Serine (N)
+0.4
+0.3
+0.1
+0.2
-0.4
nitrogen source
NAG (N)
+0.3
+0.4
+0.2
+0.3
-0.4
nitrogen source
Uridine (N)
+0.4
+0.1
+0.1
+0.2
+0.5
stress
Chlorite 0.1 mM
+0.5
-0.2
+0.1
+0.2
+0.8
nitrogen source
L-Arginine (N)
+0.5
+0.5
+0.5
+0.2
+0.3
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