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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa0816 and SMa0817 are separated by 12 nucleotides
SMa0817 and SMa0819 are separated by 11 nucleotides
SMa0819 and SMa0822 are separated by 31 nucleotides
SMa0822 and SMa0824 are separated by 1518 nucleotides
SMa0816: SMa0816 - FixX ferredoxin-like protein, at 447,740 to 448,036
SMa0816
SMa0817: SMa0817 - oxidoreductase FixC, at 448,049 to 449,356
SMa0817
SMa0819: SMa0819 - FixB electron transfer flavoprotein alpha chain, at 449,368 to 450,429
SMa0819
SMa0822: SMa0822 - FixA electron transfer flavoprotein beta chain, at 450,461 to 451,339
SMa0822
SMa0824: SMa0824 - hypothetical protein, at 452,858 to 453,325
SMa0824
Group
Condition
SMa0816
SMa0817
SMa0819
SMa0822
SMa0824
stress
3-octanone 5.310333333 mM
-0.3
-0.2
-0.2
-0.6
-0.7
nitrogen source
NAG (N)
-0.4
-0.4
-0.2
+0.2
-0.9
carbon source
D-Glucose (C)
-0.3
-0.2
-0.1
-0.5
-0.5
r2a control
R2A control for volatile experiments
-0.5
-0.2
-0.2
-0.3
-0.3
stress
6-Pentyl-2H-pyran-2-one 0.4557668333 mM
-0.7
+0.0
+0.0
+0.1
-0.9
nitrogen source
L-Asparagine (N)
+0.5
+0.1
-0.3
-0.2
-1.4
stress
6-Pentyl-2H-pyran-2-one 0.4177863333 mM
-0.6
-0.1
-0.1
-0.2
-0.3
stress
copper (II) chloride 1 mM
-0.5
+0.0
-0.6
-0.4
+0.3
stress
1-octen-3-ol 0.4933903333 mM
-0.6
-0.1
+0.1
-0.2
-0.4
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.7
-0.1
-0.2
+0.1
-0.2
nitrogen source
L-Arginine (N)
-0.7
+0.0
-0.1
+0.3
-0.5
nitrogen source
D-Glucosamine Hydrochloride (N)
-0.3
+0.0
-0.3
+0.5
-0.8
nitrogen source
Uridine (N)
+0.3
-0.1
-0.1
-0.4
-0.5
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
+0.4
+0.1
-0.4
-0.8
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.2
+0.1
-0.1
-0.1
-0.8
stress
Chlorite 0.1 mM
+0.3
+0.0
-0.2
-0.9
-0.0
r2a control
R2A control for volatile experiments
-0.7
-0.2
-0.2
+0.4
-0.0
nitrogen source
L-Histidine (N)
+0.3
-0.0
-0.4
+0.1
-0.7
stress
Cisplatin 0.001 mg/ml
-0.3
+0.2
-0.4
+0.2
-0.3
lb no stress control
LB no stress control
-0.9
-0.0
+0.2
+0.2
-0.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.4
+0.2
-0.2
-0.3
-0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.4
-0.0
+0.1
+0.0
-0.8
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.6
-0.0
+0.2
-0.4
-0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-0.0
-0.5
-0.2
+0.6
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.6
+0.1
+0.2
+0.1
-0.4
stress
Paraquat dichloride 0.2 mg/ml
+0.7
+0.2
+0.1
-0.2
-0.1
stress
Thallium(I) acetate 0.0025 mg/ml
+0.7
+0.2
-0.2
-0.1
+0.1
carbon source
D-Ribose (C)
+0.2
+0.1
+0.2
-0.2
+0.7
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.7
+0.2
-0.4
+0.5
+0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+1.1
-0.2
+0.1
+0.5
-0.1
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