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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa0800 and SMa0802 are separated by 1 nucleotides
SMa0802 and SMa0803 overlap by 4 nucleotides
SMa0803 and SMa0805 are separated by 81 nucleotides
SMa0805 and SMa0806 are separated by 359 nucleotides
SMa0800: SMa0800 - ABC transporter permease, at 436,964 to 437,839
SMa0800
SMa0802: SMa0802 - ABC transporter permease, at 437,841 to 438,641
SMa0802
SMa0803: SMa0803 - ABC transporter ATP-binding protein, at 438,638 to 439,717
SMa0803
SMa0805: SMa0805 - GabD4 succinate-semialdehyde dehdyrogenase, at 439,799 to 441,271
SMa0805
SMa0806: SMa0806 - SyrB-like regulator, at 441,631 to 442,086
SMa0806
Group
Condition
SMa0800
SMa0802
SMa0803
SMa0805
SMa0806
nitrogen source
L-Arginine (N)
-0.6
-0.6
+0.1
-0.8
-0.5
stress
Nickel (II) chloride 1 mM
-0.5
-0.2
-0.0
-0.9
-0.4
stress
1-octen-3-ol 0.5427293333 mM
-0.1
-0.2
-0.2
-0.6
-0.3
r2a control
R2A control for volatile experiments
+0.3
+0.0
-0.1
-0.9
-0.6
stress
copper (II) chloride 1 mM
+0.1
-0.7
-0.2
-0.3
-0.1
nitrogen source
NAG (N)
+0.2
-0.0
-0.2
-0.9
-0.2
stress
Cisplatin 0.0005 mg/ml
-0.2
-0.4
-0.3
+0.1
-0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.0
-0.2
+0.1
-0.2
-0.9
stress
3-octanone 0.456 mM
-0.2
+0.2
+0.2
-0.7
-0.5
r2a control
R2A control for volatile experiments
+0.1
+0.1
-0.1
-0.5
-0.4
nitrogen source
Uridine (N)
+0.0
+0.2
-0.2
-0.7
-0.1
dmso control
DMSO control
-0.1
-0.0
+0.3
-0.9
+0.1
stress
1-octen-3-ol 0.5427293333 mM
-0.2
+0.2
-0.1
-0.8
+0.2
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.3
-0.4
+0.2
-0.5
-0.2
stress
Thallium(I) acetate 0.0025 mg/ml
+0.1
-0.5
-0.0
-0.7
+0.6
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
+0.6
-0.2
-0.4
-0.4
stress
3-octanone 0.456 mM
-0.5
+0.3
-0.1
+0.1
-0.3
carbon source
NAG (C)
-0.4
+0.2
+0.2
-0.2
-0.2
nitrogen source
L-Leucine (N)
+0.2
+0.3
-0.1
-1.0
+0.1
nutrient
L-Histidine
-0.3
-0.0
-0.1
+0.4
-0.5
carbon source
D-Xylose (C)
+0.1
+0.2
+0.1
-0.6
-0.2
stress
Paraquat dichloride 0.3 mg/ml
-0.2
-0.2
-0.4
+0.4
+0.1
r2a control
R2A control
+0.2
-0.0
+0.1
-0.7
+0.5
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.2
+0.2
+0.2
-0.6
+0.2
stress
Chlorite 0.1 mM
+0.5
-0.4
+0.2
+0.3
-0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.2
+0.3
+0.2
+0.5
-0.3
stress
Paraquat dichloride 0.2 mg/ml
+0.3
+0.1
+0.2
+0.6
-0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.2
+0.5
+0.3
+0.4
-0.2
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.4
-0.1
+0.6
-0.1
+0.6
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.4
-0.1
+0.1
+0.5
+0.4
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