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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa0793 and SMa0794 overlap by 4 nucleotides
SMa0794 and SMa0796 are separated by 5 nucleotides
SMa0796 and SMa0797 are separated by 5 nucleotides
SMa0797 and SMa0799 are separated by 37 nucleotides
SMa0793: SMa0793 - hypothetical protein, at 432,050 to 432,985
SMa0793
SMa0794: SMa0794 - Monoxygenase, at 432,982 to 434,022
SMa0794
SMa0796: SMa0796 - hypothetical protein, at 434,028 to 435,491
SMa0796
SMa0797: SMa0797 - hypothetical protein, at 435,497 to 435,823
SMa0797
SMa0799: SMa0799 - ABC transporter substrate-binding protein, at 435,861 to 436,871
SMa0799
Group
Condition
SMa0793
SMa0794
SMa0796
SMa0797
SMa0799
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.8
+0.1
-0.0
-1.2
+0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.4
-0.4
-0.1
-1.0
+0.2
carbon source
D-Trehalose (C)
-0.0
-0.3
-0.1
-0.9
+0.0
stress
3-octanone 5.310333333 mM
-0.4
-0.0
+0.0
-0.7
-0.0
lb no stress control
LB no stress control
-0.1
+0.1
-0.1
-0.8
-0.3
carbon source
5-Aminovaleric (C)
+0.1
-0.2
+0.0
-0.9
-0.2
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.2
-0.2
-0.0
-0.8
-0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-0.4
+0.1
+0.0
-0.4
-0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.2
+0.1
-0.0
-1.1
-0.2
stress
Nickel (II) chloride 1 mM
+0.3
-0.2
-0.2
-0.6
-0.3
carbon source
pipercolic (C)
+0.2
-0.2
-0.0
-0.7
-0.1
stress
3-octanone 2.655166667 mM
-0.2
+0.2
+0.0
-0.7
-0.2
stress
Cisplatin 0.0005 mg/ml
-0.4
+0.0
+0.2
-0.4
-0.2
carbon source
acetate (C)
+0.2
-0.1
-0.0
-0.6
-0.2
stress
Aluminum chloride
-0.2
+0.3
-0.1
-0.5
-0.1
nitrogen source
Cytosine (N)
-0.3
-0.0
-0.1
-0.5
+0.2
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.2
+0.3
-0.1
-0.5
-0.3
carbon source
D-Xylose (C)
+0.3
+0.1
-0.1
-0.8
+0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.7
-0.0
+0.2
+0.1
+0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.5
-0.3
+0.1
+0.5
+0.1
r2a control
R2A control for volatile experiments
+0.0
-0.2
+0.1
+0.5
-0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.2
+0.2
+0.2
-0.3
+0.3
stress
copper (II) chloride 1 mM
-0.1
-0.5
+0.1
+0.8
-0.0
nitrogen source
D-Glucosamine Hydrochloride (N)
+0.3
-0.2
-0.3
+0.4
+0.1
stress
Paraquat dichloride 0.05 mg/ml
+0.5
-0.1
+0.1
-0.1
+0.3
carbon source
Mannobiose (C)
+0.4
-0.1
-0.1
+0.5
-0.1
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.4
+0.1
+0.2
+0.3
-0.3
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
+0.2
-0.1
+0.3
+0.6
-0.1
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.2
-0.1
+0.2
+0.8
-0.0
r2a control
R2A control for volatile experiments
+0.4
+0.1
+0.2
+0.6
-0.0
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