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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa0789 and SMa0791 are separated by 462 nucleotides
SMa0791 and SMa0792 are separated by 18 nucleotides
SMa0792 and SMa0793 overlap by 4 nucleotides
SMa0793 and SMa0794 overlap by 4 nucleotides
SMa0789: SMa0789 - GntR family transcriptional regulator, at 429,441 to 430,136
SMa0789
SMa0791: SMa0791 - hypothetical protein, at 430,599 to 431,201
SMa0791
SMa0792: SMa0792 - hypothetical protein, at 431,220 to 432,053
SMa0792
SMa0793: SMa0793 - hypothetical protein, at 432,050 to 432,985
SMa0793
SMa0794: SMa0794 - Monoxygenase, at 432,982 to 434,022
SMa0794
Group
Condition
SMa0789
SMa0791
SMa0792
SMa0793
SMa0794
nitrogen source
L-Arginine (N)
-4.3
-0.7
-0.1
-0.0
-0.4
stress
copper (II) chloride 1 mM
-4.3
+0.3
-0.3
-0.1
-0.5
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-4.0
+0.1
-0.1
-0.5
-0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-3.7
+0.1
-0.5
-0.8
+0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-3.9
+0.3
-0.5
-0.7
-0.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-4.1
+0.1
-0.3
-0.1
-0.1
stress
copper (II) chloride 1 mM
-4.2
+0.3
-0.2
+0.1
-0.2
stress
Nickel (II) chloride 1 mM
-3.4
-0.5
-0.3
+0.3
-0.2
stress
Paraquat dichloride 0.3 mg/ml
-3.3
+0.1
-0.7
-0.2
+0.0
nitrogen source
L-Leucine (N)
-3.9
-0.3
+0.2
+0.2
-0.1
stress
Sisomicin 0.004 mg/ml
-3.2
-0.1
-0.3
-0.3
+0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-3.2
-0.2
-0.1
-0.2
+0.2
carbon source
Lactulose (C)
-2.9
+0.0
-0.1
-0.4
-0.1
temperature
LB, 23C
-2.9
-0.1
-0.5
-0.1
+0.1
stress
Fusidic 0.0001 mg/ml
-3.5
+0.1
-0.3
+0.1
+0.1
stress
Cisplatin 0.0005 mg/ml
-2.3
-0.3
-0.5
-0.4
+0.0
stress
Cisplatin 0.001 mg/ml
-3.0
+0.4
-0.5
-0.4
+0.0
temperature
LB, 23C
-3.0
-0.2
-0.4
+0.0
+0.2
stress
Polymyxin B sulfate 0.00005 mg/ml
-2.8
-0.2
-0.4
+0.2
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-3.3
+0.3
-0.2
-0.2
+0.1
carbon source
palatinose (C)
-2.7
-0.0
-0.4
-0.2
-0.1
nitrogen source
L-Asparagine (N)
-2.3
-0.5
-0.3
+0.1
-0.0
nitrogen source
L-Serine (N)
-3.1
-0.3
-0.1
+0.4
-0.0
stress
nitrate 40 mM
-2.5
+0.1
-0.7
+0.1
-0.0
carbon source
Lactulose (C)
-3.1
+0.1
-0.1
+0.2
-0.1
carbon source
pipercolic (C)
-2.6
-0.1
-0.1
+0.2
-0.2
stress
Thallium(I) acetate 0.0025 mg/ml
-2.4
+0.3
-0.4
+0.2
-0.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-2.4
+0.2
-0.5
+0.2
+0.1
carbon source
L-Alanine (C)
+6.9
-0.1
-0.2
-0.1
+0.2
carbon source
L-Alanine (C)
+7.0
+0.2
+0.0
+0.1
+0.1
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