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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa0787 and SMa0789 are separated by 383 nucleotides
SMa0789 and SMa0791 are separated by 462 nucleotides
SMa0791 and SMa0792 are separated by 18 nucleotides
SMa0792 and SMa0793 overlap by 4 nucleotides
SMa0787: SMa0787 - transposase, fragment, at 428,239 to 429,057
SMa0787
SMa0789: SMa0789 - GntR family transcriptional regulator, at 429,441 to 430,136
SMa0789
SMa0791: SMa0791 - hypothetical protein, at 430,599 to 431,201
SMa0791
SMa0792: SMa0792 - hypothetical protein, at 431,220 to 432,053
SMa0792
SMa0793: SMa0793 - hypothetical protein, at 432,050 to 432,985
SMa0793
Group
Condition
SMa0787
SMa0789
SMa0791
SMa0792
SMa0793
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.8
-3.9
+0.3
-0.5
-0.7
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.5
-3.7
+0.1
-0.5
-0.8
nitrogen source
L-Arginine (N)
+0.2
-4.3
-0.7
-0.1
-0.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.3
-4.1
+0.1
-0.3
-0.1
stress
copper (II) chloride 1 mM
-0.1
-4.3
+0.3
-0.3
-0.1
nitrogen source
L-Leucine (N)
-0.7
-3.9
-0.3
+0.2
+0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.1
-4.0
+0.1
-0.1
-0.5
stress
copper (II) chloride 1 mM
-0.2
-4.2
+0.3
-0.2
+0.1
stress
Nickel (II) chloride 1 mM
-0.2
-3.4
-0.5
-0.3
+0.3
stress
Paraquat dichloride 0.3 mg/ml
+0.1
-3.3
+0.1
-0.7
-0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.2
-3.2
-0.2
-0.1
-0.2
stress
Sisomicin 0.004 mg/ml
-0.0
-3.2
-0.1
-0.3
-0.3
temperature
LB, 23C
+0.1
-2.9
-0.1
-0.5
-0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.1
-3.3
+0.3
-0.2
-0.2
stress
Fusidic 0.0001 mg/ml
+0.1
-3.5
+0.1
-0.3
+0.1
carbon source
Lactulose (C)
-0.1
-2.9
+0.0
-0.1
-0.4
temperature
LB, 23C
+0.2
-3.0
-0.2
-0.4
+0.0
stress
nitrate 40 mM
-0.3
-2.5
+0.1
-0.7
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.5
-2.3
+0.1
-0.6
-0.0
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.1
-2.8
-0.2
-0.4
+0.2
nitrogen source
L-Serine (N)
+0.1
-3.1
-0.3
-0.1
+0.4
carbon source
Lactulose (C)
-0.2
-3.1
+0.1
-0.1
+0.2
stress
Cisplatin 0.0005 mg/ml
+0.5
-2.3
-0.3
-0.5
-0.4
nitrogen source
nitrate (N)
+0.3
-3.0
-0.0
-0.1
+0.0
nitrogen source
L-Asparagine (N)
+0.4
-2.3
-0.5
-0.3
+0.1
stress
Cisplatin 0.001 mg/ml
+1.1
-3.0
+0.4
-0.5
-0.4
stress
Thallium(I) acetate 0.0025 mg/ml
+0.2
-2.4
+0.3
-0.4
+0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.7
-2.4
+0.2
-0.5
+0.2
carbon source
L-Alanine (C)
+0.1
+6.9
-0.1
-0.2
-0.1
carbon source
L-Alanine (C)
+0.1
+7.0
+0.2
+0.0
+0.1
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