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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa0763 and SMa0765 are separated by 102 nucleotides
SMa0765 and SMa0766 are separated by 11 nucleotides
SMa0766 and SMa0767 are separated by 11 nucleotides
SMa0767 and SMa0769 are separated by 3 nucleotides
SMa0763: SMa0763 - hypothetical protein, at 413,437 to 414,084
SMa0763
SMa0765: SMa0765 - cbb3-type cytochrome c oxidase subunit I, at 414,187 to 415,806
SMa0765
SMa0766: SMa0766 - cbb3-type cytochrome c oxidase subunit II, at 415,818 to 416,549
SMa0766
SMa0767: SMa0767 - FixQ2 nitrogen fixation protein, at 416,561 to 416,713
SMa0767
SMa0769: SMa0769 - FixP2 Diheme c-type cytochrome, at 416,717 to 417,580
SMa0769
Group
Condition
SMa0763
SMa0765
SMa0766
SMa0767
SMa0769
r2a control
R2A control for volatile experiments
-0.1
-0.2
-0.1
N.D.
-0.8
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.4
-0.1
+0.1
N.D.
-0.4
nitrogen source
Cytosine (N)
-0.5
-0.1
+0.0
N.D.
-0.2
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.0
-0.2
-0.1
N.D.
-0.4
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.3
-0.2
+0.1
N.D.
-0.3
nitrogen source
L-Asparagine (N)
-0.3
+0.2
+0.0
N.D.
-0.6
r2a control
R2A control for volatile experiments
-0.2
-0.1
+0.1
N.D.
-0.4
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.1
-0.3
+0.1
N.D.
-0.5
r2a control
R2A control for volatile experiments
-0.2
-0.3
-0.1
N.D.
+0.1
nitrogen source
L-Arginine (N)
-0.0
+0.1
-0.1
N.D.
-0.6
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.5
+0.4
-0.2
N.D.
-0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.3
+0.4
-0.5
N.D.
+0.1
stress
6-Pentyl-2H-pyran-2-one 0.4177863333 mM
-0.3
-0.2
-0.2
N.D.
+0.3
stress
1-octen-3-ol 0.5427293333 mM
-0.1
-0.2
-0.2
N.D.
+0.2
r2a-hepes control
R2A-HEPES control for volatile experiments
+0.3
-0.3
-0.1
N.D.
-0.1
stress
3-octanone 2.655166667 mM
+0.3
+0.1
-0.1
N.D.
-0.3
dmso control
DMSO control
+0.4
-0.2
+0.0
N.D.
-0.2
stress
copper (II) chloride 1 mM
-0.3
+0.3
-0.0
N.D.
+0.2
lb no stress control
LB no stress control
-0.0
-0.3
+0.1
N.D.
+0.4
stress
1-octen-3-ol 0.5427293333 mM
-0.0
-0.0
-0.2
N.D.
+0.5
carbon source
D-Raffinose (C)
-0.1
+0.1
-0.2
N.D.
+0.4
pH
LB, pH6
-0.2
+0.1
+0.1
N.D.
+0.4
temperature
LB, 30C
-0.2
+0.1
-0.0
N.D.
+0.5
stress
Cisplatin 0.0005 mg/ml
-0.2
+0.3
-0.0
N.D.
+0.4
nitrogen source
L-Histidine (N)
+0.3
+0.1
-0.1
N.D.
+0.3
nutrient
Min media with glucose
+0.4
+0.1
+0.2
N.D.
-0.1
stress
Sisomicin 0.004 mg/ml
+0.3
+0.1
+0.1
N.D.
+0.2
carbon source
D-Xylose (C)
+0.4
+0.1
+0.1
N.D.
+0.2
stress
Thallium(I) acetate 0.0025 mg/ml
+0.2
+0.2
-0.1
N.D.
+0.4
nitrogen source
D-Glucosamine Hydrochloride (N)
+0.4
+0.1
+0.1
N.D.
+0.2
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