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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa5003 and SMa0750 are separated by 70 nucleotides
SMa0750 and SMa0751 are separated by 147 nucleotides
SMa0751 and SMa0752 are separated by 4 nucleotides
SMa0752 and SMa0753 are separated by 295 nucleotides
SMa5003: SMa5003 - hypothetical protein, at 402,820 to 403,107
SMa5003
SMa0750: SMa0750 - LysR family transcriptional regulator, at 403,178 to 404,056
SMa0750
SMa0751: SMa0751 - Ring-hydroxylating dioxygenase, at 404,204 to 405,442
SMa0751
SMa0752: SMa0752 - dioxygenase reductase subunit, at 405,447 to 406,508
SMa0752
SMa0753: SMa0753 - hypothetical protein, at 406,804 to 407,496
SMa0753
Group
Condition
SMa5003
SMa0750
SMa0751
SMa0752
SMa0753
nitrogen source
L-Leucine (N)
-0.2
-0.3
+0.0
-0.1
-4.6
stress
6-Pentyl-2H-pyran-2-one 0.4557668333 mM
-0.2
-1.0
+0.0
-0.3
-2.2
stress
Thallium(I) acetate 0.001 mg/ml
+0.4
+0.2
+0.0
+0.0
-4.1
stress
3-octanone 5.310333333 mM
-0.3
-0.6
-0.2
+0.0
-2.2
stress
6-Pentyl-2H-pyran-2-one 0.4177863333 mM
-0.0
-0.7
-0.1
-0.1
-2.2
stress
6-Pentyl-2H-pyran-2-one 0.385649 mM
-0.1
-0.5
-0.2
-0.0
-2.1
r2a control
R2A control for volatile experiments
-0.2
-0.1
-0.1
-0.1
-2.5
stress
3-octanone 0.456 mM
-0.5
-0.2
-0.1
-0.0
-2.1
stress
1-octen-3-ol 0.6030326667 mM
-0.1
-0.5
-0.1
-0.0
-2.1
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.4
+0.3
+0.0
-0.0
-3.6
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.3
-0.2
-0.1
-0.1
-2.2
nitrogen source
nitrate (N)
-0.0
+0.1
-0.3
+0.0
-2.6
stress
1-octen-3-ol 0.5427293333 mM
-0.0
-0.6
-0.1
-0.0
-2.1
stress
copper (II) chloride 1 mM
+0.0
-0.4
+0.2
-0.3
-2.3
stress
1-octen-3-ol 0.6030326667 mM
+0.1
-0.3
-0.3
+0.1
-2.2
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.5
-0.4
-0.1
-0.2
-1.4
r2a control
R2A control for volatile experiments
-0.3
-0.4
-0.4
-0.2
-1.3
dmso control
DMSO control
+0.1
-0.3
-0.1
-0.1
-2.2
stress
6-Pentyl-2H-pyran-2-one 0.4557668333 mM
+0.1
-0.1
-0.1
+0.0
-2.2
lb no stress control
LB no stress control
-0.2
+0.0
+0.1
+0.0
-2.2
stress
6-Pentyl-2H-pyran-2-one 0.385649 mM
+0.1
-0.3
-0.0
+0.1
-2.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.2
+0.6
-0.2
-0.0
-2.2
stress
1-octen-3-ol 0.5427293333 mM
+0.2
+0.2
-0.1
+0.0
-2.1
pH
LB, pH7
+0.1
+0.4
-0.1
+0.2
-1.7
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.5
+0.5
+0.0
-0.4
+1.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.3
+0.5
-0.3
+0.1
+1.5
carbon source
Lactitol (C)
-0.1
+0.3
+0.1
-0.2
+1.7
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.3
+0.4
+0.0
+0.0
+1.7
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.1
+0.2
+0.2
+0.3
+2.6
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.1
+0.5
+0.0
-0.1
+2.9
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