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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa0719 and SMa0722 are separated by 98 nucleotides
SMa0722 and SMa0723 are separated by 37 nucleotides
SMa0723 and SMa0726 are separated by 589 nucleotides
SMa0726 and SMa0728 are separated by 421 nucleotides
SMa0719: SMa0719 - short-chain alcohol dehydrogenase, at 391,032 to 391,751
SMa0719
SMa0722: SMa0722 - transposase, at 391,850 to 392,461
SMa0722
SMa0723: SMa0723 - hypothetical protein, at 392,499 to 393,287
SMa0723
SMa0726: SMa0726 - hypothetical protein, at 393,877 to 394,269
SMa0726
SMa0728: SMa0728 - hypothetical protein, at 394,691 to 394,891
SMa0728
Group
Condition
SMa0719
SMa0722
SMa0723
SMa0726
SMa0728
stress
copper (II) chloride 1 mM
-0.9
-0.0
-0.5
-0.5
-0.7
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.2
-0.4
+0.1
-0.5
-0.4
stress
Aluminum chloride
+0.2
-0.5
+0.1
-0.2
-0.9
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.1
-0.5
+0.1
-0.2
-0.6
stress
1-octen-3-ol 0.4933903333 mM
+0.2
-0.2
-0.1
-0.3
-0.6
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-0.9
-0.1
-0.3
-0.0
+0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.4
-0.0
+0.3
-0.3
-0.6
stress
Thallium(I) acetate 0.001 mg/ml
-0.3
-0.3
-0.4
+0.4
-0.3
stress
6-Pentyl-2H-pyran-2-one 0.4177863333 mM
+0.3
-0.2
-0.1
-0.2
-0.6
stress
3-octanone 2.655166667 mM
+0.2
+0.0
-0.3
-0.3
-0.5
stress
Polymyxin B sulfate 0.00005 mg/ml
-0.7
-0.7
+0.4
-0.7
+0.9
nitrogen source
L-Asparagine (N)
-1.0
-0.2
+0.3
+0.0
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.6
-0.1
+0.3
+0.2
-0.5
nitrogen source
L-Arginine (N)
+0.2
+0.2
-0.0
+0.2
-1.4
stress
6-Pentyl-2H-pyran-2-one 0.385649 mM
+0.3
+0.1
-0.4
-0.3
-0.2
lb no stress control
LB no stress control
+0.4
-0.2
-0.6
+0.3
-0.1
temperature
LB, 30C
-0.2
+0.5
-0.1
+0.1
-0.6
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
+0.2
-0.1
-0.6
+0.1
+0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.4
-0.2
+0.3
-0.2
+0.3
stress
Cisplatin 0.0005 mg/ml
-0.6
-0.0
+0.1
+0.4
+0.2
carbon source
5-Aminovaleric (C)
-0.5
-0.1
+0.3
+0.2
+0.3
carbon source
succinate (C)
+0.3
+0.3
-0.1
+0.1
-0.5
lb
LB
-0.5
+0.4
+0.3
+0.2
-0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.6
-0.1
+0.2
+0.6
-0.8
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.4
-0.4
+0.1
+0.1
+0.4
stress
Thallium(I) acetate 0.0025 mg/ml
+0.1
-0.2
+0.2
-0.0
+0.8
carbon source
acetate (C)
+0.2
-0.0
+0.4
+0.3
+0.4
stress
Chlorite 0.1 mM
-0.0
+0.1
+0.8
+0.1
+0.3
stress
Cobalt chloride 0.16 mM
+0.4
+0.2
+0.4
-0.3
+0.7
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.1
+0.2
+0.6
+0.3
+0.5
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