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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMa0717 and SMa0719 are separated by 57 nucleotides
SMa0719 and SMa0722 are separated by 98 nucleotides
SMa0722 and SMa0723 are separated by 37 nucleotides
SMa0723 and SMa0726 are separated by 589 nucleotides
SMa0717: SMa0717 - hypothetical protein, at 389,265 to 390,974
SMa0717
SMa0719: SMa0719 - short-chain alcohol dehydrogenase, at 391,032 to 391,751
SMa0719
SMa0722: SMa0722 - transposase, at 391,850 to 392,461
SMa0722
SMa0723: SMa0723 - hypothetical protein, at 392,499 to 393,287
SMa0723
SMa0726: SMa0726 - hypothetical protein, at 393,877 to 394,269
SMa0726
Group
Condition
SMa0717
SMa0719
SMa0722
SMa0723
SMa0726
stress
Polymyxin B sulfate 0.00005 mg/ml
-0.4
-0.7
-0.7
+0.4
-0.7
stress
copper (II) chloride 1 mM
+0.0
-0.9
-0.0
-0.5
-0.5
carbon source
Lactulose (C)
-0.9
-0.1
+0.0
-0.4
-0.2
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
+0.1
-0.9
-0.1
-0.3
-0.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.2
-0.2
-0.4
+0.1
-0.5
nitrogen source
Uridine (N)
-0.5
-0.2
-0.5
-0.1
+0.3
carbon source
Lactitol (C)
-1.1
-0.2
-0.1
+0.1
+0.3
nitrogen source
L-Asparagine (N)
-0.0
-1.0
-0.2
+0.3
+0.0
stress
Thallium(I) acetate 0.001 mg/ml
-0.2
-0.3
-0.3
-0.4
+0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.3
-0.4
-0.0
+0.3
-0.3
carbon source
Lactitol (C)
-0.8
+0.4
+0.1
-0.3
-0.1
carbon source
D-Salicin (C)
-1.1
+0.4
-0.1
+0.0
+0.1
carbon source
Methyl beta-D-glucopyranoside (C)
-1.1
+0.4
+0.1
-0.0
+0.1
stress
6-Pentyl-2H-pyran-2-one 0.385649 mM
+0.3
-0.1
-0.3
-0.5
-0.1
carbon source
methyl 3-keto-a-D-glucopyranoside (C)
-0.7
+0.2
-0.1
-0.2
+0.2
carbon source
Methyl beta-D-glucopyranoside (C)
-0.8
+0.1
+0.0
+0.3
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.3
-0.6
-0.1
+0.3
+0.2
r2a control
R2A control for volatile experiments
+0.4
-0.4
-0.3
-0.3
+0.1
r2a control
R2A control for volatile experiments
+0.3
-0.1
-0.1
-0.8
+0.2
stress
Cisplatin 0.0005 mg/ml
-0.2
-0.6
-0.0
+0.1
+0.4
nitrogen source
Cytosine (N)
+0.2
-0.6
-0.1
+0.2
-0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.4
+0.4
-0.4
+0.1
+0.1
lb no stress control
LB no stress control
+0.1
+0.4
-0.2
-0.6
+0.3
carbon source
Xylobiose (C)
-0.8
+0.4
+0.3
-0.1
+0.2
lb
LB
-0.2
-0.5
+0.4
+0.3
+0.2
r2a control
R2A control for volatile experiments
+0.6
+0.2
-0.3
-0.2
-0.0
carbon source
Xylobiose (C)
-0.6
+0.5
+0.0
+0.3
+0.2
stress
Chlorite 0.1 mM
-0.3
-0.0
+0.1
+0.8
+0.1
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.3
-0.1
+0.2
+0.6
+0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.3
+0.6
-0.1
+0.2
+0.6
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